Ss1.1-Pig4-TMW8014N03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCACAGAGGCAGCGCACTCTTGCACAGAGAACTCACACTGAGCAGCCAGGTGTAAACT TTGGGGATTGCTGTGATTACAGGGTCTGAGATGCCAGAGTGCTGAAGGAACACAGGTCAC CACAGCTGCCTGGTCACAAGTGCCTTCACCACTCGCGCAGGTGCTGCCGGCAGAGCGGGT GCTCCCACGTGGGATGGGAGGCGGGGAGGGCGCCACCCAGAATTCCAAGCAGACGCCTCA TCTTTACAAATCATTGTCTACTAAGTCGGACGGAAGCACCCACCTGCCTTCAAGTTTTAT TCACGTCGAGAGTTTTCTAACAAGGTTAACATCTTAGTTCCTAACCTTTTTTTCTTTGTG TGTAGTAGTTGCTTTTTCTGTTACCTTGGTAGGAAGCTTACTGACAAACCATATTCTAGT ACAAATACACCTAAAAAGTACTCTGTACAGAGCAGAACTAAATCACAGTCCATTCCACAA AGCGCATCCAAACCACCCAAGTGACCAAGGTGAGTAGCGTGCAGAGGAAAGGGGTTTGGA AGGAGCAGAGAGGAGGGGAGGGAAATGCGACCGGCACTGAGACTGTGCTCGCTGAGATGA AAGCAGGACAGCAGGAGGTGGTAAAGGCCAGGCTTTTCTTCGGTTTTCTTCAAAACTCAT CAAAGCACAGGTGAGCCGCCACTGCCGGTCCCTAATCAGGGAACCAAGGGTCAGCCAGGA AGAAGCTTGTGCTCCGGACGCTGCAGTGTCTGAGCTGGGGCTGTCGCTGGAGGTTTTAGG TGCGAAGCGCAAGTTGAACATAAGGCTGAGCTGTGAAGTTGTCACGGATCAGAAACAGCG GGTGGGCTCTGATCTGCTTGGGGCGAATGTAGACTTAGGGAGACAGAAGTAGGTTGGCGT CAAGGTACAGGGGGAAAGCTGGTTCACTTCCCTGCTGCCATGAGACCTTTGCCTTAAGGT GCTGGGTTCCAAGGACTTGGTGCAGGCATCTCGGCCAAGACTGCTTTTCGATGTCTGTGG TTCTTTGTCAGCCACATGGAGTGGATTCTGACCAGACTTGAGGGTTTTTAAGTCGGAACC AAGAAACTTAAAAAGGGGAAAAAGCAATTTGGCCTGCTATTCTAAAACATGAGTCTTTAA TGGTACTTTGCTACGAAGCGAACACACTGTATTCCTTACGCAAAACACATAATCTTCCAT TATTTATAATGAAAATGTTGAACTCTCTTAGCTCAGTTACTCAGTTCGATACGTAGTATT TTTAATGCTTTTGTATCTGTGTGCCACCCTGTGTATTCTATATGACTACTTGTATGAGCA CCAACCAACCACGCCTTAGCTGACAGGCTTGAGCTCCGGTGCCCCAGGCTCCACAGGGGC CCAGGTTCTCCGACCACACCTGCGTGCATTGCTTCTGTGAGGTTTTGGACACGTGCCAAC TCTTTCCTGGACCTTTCTCTATTGTAGAATTTATCTTACTTGCCAAATTTTTCTGAATGT GACTTTTTGCTAATTTGCTGGTTTTGGGATTAAGTAGCATCATTTTGCCACCTTTCATGT TATATTTATAAAAAAAAGTATTATCTTACTACTTTGGATTGTTGTGCTGGTGTAATGTGG ATTTAACATCAATAAATATTTAACAGAATAGTGAAAAAAAAAAAAAAAAGCGTATTCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCACAGAGGCAGCGCACTCTTGCACAGAGAACTCACACTGAGCAGCCAGGTGTAAACT TTGGGGATTGCTGTGATTACAGGGTCTGAGATGCCAGAGTGCTGAAGGAACACAGGTCAC CACAGCTGCCTGGTCACAAGTGCCTTCACCACTCGCGCAGGTGCTGCCGGCAGAGCGGGT GCTCCCACGTGGGATGGGAGGCGGGGAGGGCGCCACCCAGAATTCCAAGCAGACGCCTCA TCTTTACAAATCATTGTCTACTAAGTCGGACGGAAGCACCCACCTGCCTTCAAGTTTTAT TCACGTCGAGAGTTTTCTAACAAGGTTAACATCTTAGTTCCTAACCTTTTTTTCTTTGTG TGTAGTAGTTGCTTTTTCTGTTACCTTGGTAGGAAGCTTACTGACAAACCATATTCTAGT ACAAATACACCTAAAAAGTACTCTGTACAGAGCAGAACTAAATCACAGTCCATTCCACAA AGCGCATCCAAACCACCCAAGTGACCAAGGTGAGTAGCGTGCAGAGGAAAGGGGTTTGGA AGGAGCAGAGAGGAGGGGAGGGAAATGCGACCGGCACTGAGACTGTGCTCGCTGAGATGA AAGCAGGACAGCAGGAGGTGGTAAAGGCCAGGCTTTTCTTCGGTTTTCTTCAAAACTCAT CAAAGCACAGGTGAGCCGCCACTGCCGGTCCCTAATCAGGGAACCAAGGGTCAGCCAGGA AGAAGCTTGTGCTCCGGACGCTGCAGTGTCTGAGCTGGGGCTGTCGCTGGAGGTTTTAGG TGCGAAGCGCAAGTTGAACATAAGGCTGAGCTGTGAAGTTGTCACGGATCAGAAACAGCG GGTGGGCTCTGATCTGCTTGGGGCGAATGTAGACTTAGGGAGACAGAAGTAGGTTGGCGT CAAGGTACAGGGGGAAAGCTGGTTCACTTCCCTGCTGCCATGAGACCTTTGCCTTAAGGT GCTGGGTTCCAAGGACTTGGTGCAGGCATCTCGGCCAAGACTGCTTTTCGATGTCTGTGG TTCTTTGTCAGCCACATGGAGTGGATTCTGACCAGACTTGAGGGTTTTTAAGTCGGAACC AAGAAACTTAAAAAGGGGAAAAAGCAATTTGGCCTGCTATTCTAAAACATGAGTCTTTAA TGGTACTTTGCTACGAAGCGAACACACTGTATTCCTTACGCAAAACACATAATCTTCCAT TATTTATAATGAAAATGTTGAACTCTCTTAGCTCAGTTACTCAGTTCGATACGTAGTATT TTTAATGCTTTTGTATCTGTGTGCCACCCTGTGTATTCTATATGACTACTTGTATGAGCA CCAACCAACCACGCCTTAGCTGACAGGCTTGAGCTCCGGTGCCCCAGGCTCCACAGGGGC CCAGGTTCTCCGACCACACCTGCGTGCATTGCTTCTGTGAGGTTTTGGACACGTGCCAAC TCTTTCCTGGACCTTTCTCTATTGTAGAATTTATCTTACTTGCCAAATTTTTCTGAATGT GACTTTTTGCTAATTTGCTGGTTTTGGGATTAAGTAGCATCATTTTGCCACCTTTCATGT TATATTTATAAAAAAAAGTATTATCTTACTACTTTGGATTGTTGTGCTGGTGTAATGTGG ATTTAACATCAATAAATATTTAACAGAATAGTGAAAAAAAAAAAAAAAAGCGTATTCAGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 485-578, - strand, RNAz p=0.511958 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 485-578, - strand, RNAz p=0.511958 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 21-401, gnl|bosTau2|chr8 (790235-790608) | |
| 21-401, gnl|Hg17|chr4 (170222460-170222942) | |
| 21-401, gnl|Mm7|chr8 (59922384-59921990) | |
| 435-654, gnl|bosTau2|chr8 (790623-790842) | |
| 435-654, gnl|canFam2|chr25 (22536029-22536493) | |
| 435-654, gnl|echTel1|scaffold_157824 (3330-3778) | |
| 435-654, gnl|galGal2|chr4 (25713447-25713844) | |
| 435-654, gnl|hg17|chr4 (170222740-170223213) | |
| 435-654, gnl|Hg17|chr4 (170222976-170223206) | |
| 435-654, gnl|loxAfr1|scaffold_10052 (2048-1555) | |
| 435-654, gnl|mm7|chr8 (59922131-59921729) | |
| 435-654, gnl|Mm7|chr8 (59921949-59921744) | |
| 435-654, gnl|monDom2|scaffold_9 (44992159-44992644) | |
| 435-654, gnl|oryCun1|scaffold_208125 (388488-388960) | |
| 435-654, gnl|panTro1|chr3 (187832089-187832562) | |
| 435-654, gnl|rheMac2|chr5 (161055489-161055944) | |
| 435-654, gnl|rn3|chr16 (31933114-31933506) | |
| 1027-1311, gnl|bosTau2|chr8 (791187-791451) | |
| 1027-1311, gnl|Hg17|chr4 (170223624-170223903) | |
| 1027-1311, gnl|Mm7|chr8 (59921341-59921053) | |
| 1471-1645, gnl|bosTau2|chr8 (791594-791767) | |
| 1471-1645, gnl|canFam2|chr25 (22537354-22537553) | |
| 1471-1645, gnl|dasNov1|scaffold_6489 (323-123) | |
| 1471-1645, gnl|echTel1|scaffold_157824 (4709-4911) | |
| 1471-1645, gnl|galGal2|chr4 (25714732-25714929) | |
| 1471-1645, gnl|hg17|chr4 (170224093-170224299) | |
| 1471-1645, gnl|Hg17|chr4 (170224112-170224293) | |
| 1471-1645, gnl|loxAfr1|scaffold_10052 (673-467) | |
| 1471-1645, gnl|mm7|chr8 (59920880-59920656) | |
| 1471-1645, gnl|Mm7|chr8 (59920859-59920660) | |
| 1471-1645, gnl|monDom2|scaffold_9 (44993545-44993736) | |
| 1471-1645, gnl|oryCun1|scaffold_208125 (389831-390032) | |
| 1471-1645, gnl|panTro1|chr3 (187833641-187833837) | |
| 1471-1645, gnl|rheMac2|chr5 (161056808-161057006) | |
| 1471-1645, gnl|rn3|chr16 (31934362-31934599) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-401, gnl|bosTau2|chr8 (790235-790608) | |
| 21-401, gnl|Hg17|chr4 (170222460-170222942) | |
| 21-401, gnl|Mm7|chr8 (59922384-59921990) | |
| 435-654, gnl|bosTau2|chr8 (790623-790842) | |
| 435-654, gnl|canFam2|chr25 (22536029-22536493) | |
| 435-654, gnl|echTel1|scaffold_157824 (3330-3778) | |
| 435-654, gnl|galGal2|chr4 (25713447-25713844) | |
| 435-654, gnl|hg17|chr4 (170222740-170223213) | |
| 435-654, gnl|Hg17|chr4 (170222976-170223206) | |
| 435-654, gnl|loxAfr1|scaffold_10052 (2048-1555) | |
| 435-654, gnl|mm7|chr8 (59922131-59921729) | |
| 435-654, gnl|Mm7|chr8 (59921949-59921744) | |
| 435-654, gnl|monDom2|scaffold_9 (44992159-44992644) | |
| 435-654, gnl|oryCun1|scaffold_208125 (388488-388960) | |
| 435-654, gnl|panTro1|chr3 (187832089-187832562) | |
| 435-654, gnl|rheMac2|chr5 (161055489-161055944) | |
| 435-654, gnl|rn3|chr16 (31933114-31933506) | |
| 1027-1311, gnl|bosTau2|chr8 (791187-791451) | |
| 1027-1311, gnl|Hg17|chr4 (170223624-170223903) | |
| 1027-1311, gnl|Mm7|chr8 (59921341-59921053) | |
| 1471-1645, gnl|bosTau2|chr8 (791594-791767) | |
| 1471-1645, gnl|canFam2|chr25 (22537354-22537553) | |
| 1471-1645, gnl|dasNov1|scaffold_6489 (323-123) | |
| 1471-1645, gnl|echTel1|scaffold_157824 (4709-4911) | |
| 1471-1645, gnl|galGal2|chr4 (25714732-25714929) | |
| 1471-1645, gnl|hg17|chr4 (170224093-170224299) | |
| 1471-1645, gnl|Hg17|chr4 (170224112-170224293) | |
| 1471-1645, gnl|loxAfr1|scaffold_10052 (673-467) | |
| 1471-1645, gnl|mm7|chr8 (59920880-59920656) | |
| 1471-1645, gnl|Mm7|chr8 (59920859-59920660) | |
| 1471-1645, gnl|monDom2|scaffold_9 (44993545-44993736) | |
| 1471-1645, gnl|oryCun1|scaffold_208125 (389831-390032) | |
| 1471-1645, gnl|panTro1|chr3 (187833641-187833837) | |
| 1471-1645, gnl|rheMac2|chr5 (161056808-161057006) | |
| 1471-1645, gnl|rn3|chr16 (31934362-31934599) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| aor (0.976372) | |
| bla (0.621736) | |
| ova (0.516529) | |
| fat (0.442282) | |
| spl (0.429553) | |
| sto (0.359648) | |
| cut (0.339847) | |
| pty (0.285429) | |
| cga (0.279096) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.976372) | |
| bla (0.621736) | |
| ova (0.516529) | |
| fat (0.442282) | |
| spl (0.429553) | |
| sto (0.359648) | |
| cut (0.339847) | |
| pty (0.285429) | |
| cga (0.279096) | |
| ece (0.229305) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| mga (0.160205) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |