Non-Coding RNA Search

Ss1.1-Pig4-TMW8014N17.3

Sequence:


               
               TTAAAGGGGCAGCAGTACCATGTTCTTGGGAACTTATCCAGTCACCTGGCATAAATAAAA
AGCATTCAGAATCTCTAGTCTCTAAAGCTGAAAGAAAGGAACCCATTTGTTGTTTAATCA
CAGCAATGAACAGAAACCAGTTAATCTTTTTCTTGCTGTCAAATGTAACAACTGGCCTAA
TCAACCTGTCAGTAGATACATTACACAGCAATACCTTGTGGGCCTTATTTCTGCTCAATC
TCTACATGTTTAGCAACTGCTTAATTATATATGTGCTACACTTGCAAAATAAGACTATAA
AATTTTGGTGATCAATTAGGGGAGGATATGTTTTGAGCTGTATTATTCAATGAGAAAGAA
TAAATATAAAATGTGAAGAAAATGGGGTTTTGGCAACCCAGTGTTAACTATATTTTATTA
TAAAATTAAGTTTCTTTCCTACTGTAACAGTGGTGATGCTTAATGTTTTAAATGTATGGC
AAGGCTATATAAAGCAAACCAACACAGAAGGAACAAAGCCCTTGTGATTTATTAGAATAC
TTATAAATTTCAGTATTTTAAAGAAATTGTTGTATTTACAGTCATGACACTGGAAGACTG
GAGGGTGTGAGGAAGATTTTGACTTTGTCTTATATCACCTATCACCATTCTGTATTTTTA
TTGTATGTATTATTTTTATAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAGGGGCAGCAGTACCATGTTCTTGGGAACTTATCCAGTCACCTGGCATAAATAAAA
AGCATTCAGAATCTCTAGTCTCTAAAGCTGAAAGAAAGGAACCCATTTGTTGTTTAATCA
CAGCAATGAACAGAAACCAGTTAATCTTTTTCTTGCTGTCAAATGTAACAACTGGCCTAA
TCAACCTGTCAGTAGATACATTACACAGCAATACCTTGTGGGCCTTATTTCTGCTCAATC
TCTACATGTTTAGCAACTGCTTAATTATATATGTGCTACACTTGCAAAATAAGACTATAA
AATTTTGGTGATCAATTAGGGGAGGATATGTTTTGAGCTGTATTATTCAATGAGAAAGAA
TAAATATAAAATGTGAAGAAAATGGGGTTTTGGCAACCCAGTGTTAACTATATTTTATTA
TAAAATTAAGTTTCTTTCCTACTGTAACAGTGGTGATGCTTAATGTTTTAAATGTATGGC
AAGGCTATATAAAGCAAACCAACACAGAAGGAACAAAGCCCTTGTGATTTATTAGAATAC
TTATAAATTTCAGTATTTTAAAGAAATTGTTGTATTTACAGTCATGACACTGGAAGACTG
GAGGGTGTGAGGAAGATTTTGACTTTGTCTTATATCACCTATCACCATTCTGTATTTTTA
TTGTATGTATTATTTTTATAATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-239, - strand, RNAz p=0.632133

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-239, - strand, RNAz p=0.632133

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               121-407, gnl|bosTau2|chr6 (38277647-38277933)
               

               
               121-407, gnl|Hg17|chr17 (31968394-31968667)
               

               
               121-407, gnl|Mm7|chr11 (84947082-84946791)
               


               
               428-592, gnl|bosTau2|chr6 (38277933-38278091)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-407, gnl|bosTau2|chr6 (38277647-38277933)
               

               
               121-407, gnl|Hg17|chr17 (31968394-31968667)
               

               
               121-407, gnl|Mm7|chr11 (84947082-84946791)
               


               
               428-592, gnl|bosTau2|chr6 (38277933-38278091)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               liv (0.146284)

	121-407, gnl\|bosTau2\|chr6 (38277647-38277933)
	121-407, gnl\|Hg17\|chr17 (31968394-31968667)
	121-407, gnl\|Mm7\|chr11 (84947082-84946791)

	428-592, gnl\|bosTau2\|chr6 (38277933-38278091)