Non-Coding RNA Search

Ss1.1-Pig4-TMW8014O14.5

Sequence:


               
               CTTCCTGCCCCCGGGACCGGAGCTTCCTCGCGTGACAGCCAGCTGCTCCAGGCTTGGGTG
ACTCCGGGGAGGGGCGAGCACCGGCAGCAGTTGCCCCTAGCCTCGGGTCCACGTGTGGCC
TCGGCACCCGGGCCGGTGGGAAGGGCCTAGCGCGGCTAGGCATATACTGGTTGGGCTCCA
GCCATGGAGAAAATCCATGGACATGTGTCTGCCCACCTGAACATTCTCTCCTTGGAGAAC
CGGTGCCTGGCCACACTTCCTGACCTGAAGACCTTGCAGAAACGACATGGGCATGTGTCT
GCCCACTCAGACATCCTCTCTTTGGAGAACCAGTGCCTGGCCACATTTTCTGACCTGAAA
ATCTTAGAGGATCCACGTGGGCCTGGGTGTGCCCACTCAGACATCCTCTCCTTGGAGAAC
CGGTGCCTGGCCACACTTCCTGACCTGAAGACCTTGGAGAAACCACACGGGCCTGTGTCT
CCCCACCTGGACATCCTCTCTTTGGAGAACCATTGCCTGGCCACACTTCCTGACCTGAAG
ACTTTAGAGGAACCACATGGTCATGGGTCTGTCCACCGAGACATCCTCTCCTTGGAAAAC
CGGTGCTTGGCCACACTCCCCATATTAAAGAGCACTGTGTCTCCTAGCCCCTTGCTCCAT
AATCTCCAGCTGTCTCGTCTGGTACAAGCTGATCTGTGCAGCCTGAATGCCAGCAACCAC
TTGGTCTCTGAGCCTCCAGCCTCAAGGGCTCAGTGCCTCTCTGAAGGATTAAGCCTTCTG
ACCTGCCCCAGGGTCTTGAAAACCATCTCTGCCACAGAGACAGCTCAGGAAGCAGCTTTG
GGTCGCTGGTCTTCAGGAGAGAAAAAGTCGGATGAGAAGGAATGGGCAGAGGCTGAAATG
CCTTTTTATAGTCTAAGCCTGGGAGAGAAGGAGGAGGTGGAGGAGCTGGCTCTGAAGCTC
ACTCATGGGGACTCTGAATCTCATCCCGAGCCTACTGACCAGGCCCTTCAGGAAAAGAAG
ATGGTTCTGATCAGCTATCTTTGTTCTACCCTGGCGTCAAATGTAAACATGAAAAATGAG
GCTTACTCTATCCAGACTTTCCTCCTTGAGGTCTGTAGTGAGCTTGCCCCTTGGAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCTGCCCCCGGGACCGGAGCTTCCTCGCGTGACAGCCAGCTGCTCCAGGCTTGGGTG
ACTCCGGGGAGGGGCGAGCACCGGCAGCAGTTGCCCCTAGCCTCGGGTCCACGTGTGGCC
TCGGCACCCGGGCCGGTGGGAAGGGCCTAGCGCGGCTAGGCATATACTGGTTGGGCTCCA
GCCATGGAGAAAATCCATGGACATGTGTCTGCCCACCTGAACATTCTCTCCTTGGAGAAC
CGGTGCCTGGCCACACTTCCTGACCTGAAGACCTTGCAGAAACGACATGGGCATGTGTCT
GCCCACTCAGACATCCTCTCTTTGGAGAACCAGTGCCTGGCCACATTTTCTGACCTGAAA
ATCTTAGAGGATCCACGTGGGCCTGGGTGTGCCCACTCAGACATCCTCTCCTTGGAGAAC
CGGTGCCTGGCCACACTTCCTGACCTGAAGACCTTGGAGAAACCACACGGGCCTGTGTCT
CCCCACCTGGACATCCTCTCTTTGGAGAACCATTGCCTGGCCACACTTCCTGACCTGAAG
ACTTTAGAGGAACCACATGGTCATGGGTCTGTCCACCGAGACATCCTCTCCTTGGAAAAC
CGGTGCTTGGCCACACTCCCCATATTAAAGAGCACTGTGTCTCCTAGCCCCTTGCTCCAT
AATCTCCAGCTGTCTCGTCTGGTACAAGCTGATCTGTGCAGCCTGAATGCCAGCAACCAC
TTGGTCTCTGAGCCTCCAGCCTCAAGGGCTCAGTGCCTCTCTGAAGGATTAAGCCTTCTG
ACCTGCCCCAGGGTCTTGAAAACCATCTCTGCCACAGAGACAGCTCAGGAAGCAGCTTTG
GGTCGCTGGTCTTCAGGAGAGAAAAAGTCGGATGAGAAGGAATGGGCAGAGGCTGAAATG
CCTTTTTATAGTCTAAGCCTGGGAGAGAAGGAGGAGGTGGAGGAGCTGGCTCTGAAGCTC
ACTCATGGGGACTCTGAATCTCATCCCGAGCCTACTGACCAGGCCCTTCAGGAAAAGAAG
ATGGTTCTGATCAGCTATCTTTGTTCTACCCTGGCGTCAAATGTAAACATGAAAAATGAG
GCTTACTCTATCCAGACTTTCCTCCTTGAGGTCTGTAGTGAGCTTGCCCCTTGGAGCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841911|ref|XP_607720.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841911|ref|XP_607720.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               394-593, - strand, RNAz p=0.93432
               

               
               714-833, + strand, RNAz p=0.971059

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-593, - strand, RNAz p=0.93432
               

               
               714-833, + strand, RNAz p=0.971059

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_007110, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_007110, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               156-841, gnl|bosTau2|chr10 (16418607-16419292)
               

               
               156-841, gnl|Hg17|chr14 (19946466-19945871)
               

               
               156-841, gnl|Mm7|chr14 (46202457-46201891)
               


               
               1019-1140, gnl|bosTau2|chr10 (16420874-16420996)
               

               
               1019-1140, gnl|canFam2|chr15 (20751619-20751931)
               

               
               1019-1140, gnl|dasNov1|scaffold_36921 (830-492)
               

               
               1019-1140, gnl|echTel1|scaffold_318614 (40305-39974)
               

               
               1019-1140, gnl|hg17|chr14 (19943336-19943674)
               

               
               1019-1140, gnl|Hg17|chr14 (19943586-19943464)
               

               
               1019-1140, gnl|loxAfr1|scaffold_26998 (35801-35466)
               

               
               1019-1140, gnl|mm7|chr14 (46199744-46200034)
               

               
               1019-1140, gnl|Mm7|chr14 (46200127-46199861)
               

               
               1019-1140, gnl|monDom2|scaffold_12 (30549390-30549706)
               

               
               1019-1140, gnl|oryCun1|scaffold_191926 (36402-36729)
               

               
               1019-1140, gnl|panTro1|chrUn_random (21277545-21277883)
               

               
               1019-1140, gnl|rheMac2|chr7 (83110616-83110956)
               

               
               1019-1140, gnl|rn3|chr15 (26862987-26863286)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-841, gnl|bosTau2|chr10 (16418607-16419292)
               

               
               156-841, gnl|Hg17|chr14 (19946466-19945871)
               

               
               156-841, gnl|Mm7|chr14 (46202457-46201891)
               


               
               1019-1140, gnl|bosTau2|chr10 (16420874-16420996)
               

               
               1019-1140, gnl|canFam2|chr15 (20751619-20751931)
               

               
               1019-1140, gnl|dasNov1|scaffold_36921 (830-492)
               

               
               1019-1140, gnl|echTel1|scaffold_318614 (40305-39974)
               

               
               1019-1140, gnl|hg17|chr14 (19943336-19943674)
               

               
               1019-1140, gnl|Hg17|chr14 (19943586-19943464)
               

               
               1019-1140, gnl|loxAfr1|scaffold_26998 (35801-35466)
               

               
               1019-1140, gnl|mm7|chr14 (46199744-46200034)
               

               
               1019-1140, gnl|Mm7|chr14 (46200127-46199861)
               

               
               1019-1140, gnl|monDom2|scaffold_12 (30549390-30549706)
               

               
               1019-1140, gnl|oryCun1|scaffold_191926 (36402-36729)
               

               
               1019-1140, gnl|panTro1|chrUn_random (21277545-21277883)
               

               
               1019-1140, gnl|rheMac2|chr7 (83110616-83110956)
               

               
               1019-1140, gnl|rn3|chr15 (26862987-26863286)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	394-593, - strand, RNAz p=0.93432
	714-833, + strand, RNAz p=0.971059

	156-841, gnl\|bosTau2\|chr10 (16418607-16419292)
	156-841, gnl\|Hg17\|chr14 (19946466-19945871)
	156-841, gnl\|Mm7\|chr14 (46202457-46201891)

	1019-1140, gnl\|bosTau2\|chr10 (16420874-16420996)
	1019-1140, gnl\|canFam2\|chr15 (20751619-20751931)
	1019-1140, gnl\|dasNov1\|scaffold_36921 (830-492)
	1019-1140, gnl\|echTel1\|scaffold_318614 (40305-39974)
	1019-1140, gnl\|hg17\|chr14 (19943336-19943674)
	1019-1140, gnl\|Hg17\|chr14 (19943586-19943464)
	1019-1140, gnl\|loxAfr1\|scaffold_26998 (35801-35466)
	1019-1140, gnl\|mm7\|chr14 (46199744-46200034)
	1019-1140, gnl\|Mm7\|chr14 (46200127-46199861)
	1019-1140, gnl\|monDom2\|scaffold_12 (30549390-30549706)
	1019-1140, gnl\|oryCun1\|scaffold_191926 (36402-36729)
	1019-1140, gnl\|panTro1\|chrUn_random (21277545-21277883)
	1019-1140, gnl\|rheMac2\|chr7 (83110616-83110956)
	1019-1140, gnl\|rn3\|chr15 (26862987-26863286)