Non-Coding RNA Search

Ss1.1-Pig4-TMW8015C05.5

Sequence:


               
               CTGTGCTTGGTCTTGTACATTTAAATTTAATTTAATTTTCTAAACAAAAAAGGGTTTGGG
AAAGAATTCTCCTTTTTACTCTGTAAGTCCTGCAACTGATGTTTTATTTTTCATGACTGA
GAGATTGTGTCTATAAGTGCACAATGACATGGTGGAACAAAATAGAAACTTTGAGACTTA
GGGAGAACCAGTTAACTTAAAACTTATTTTCAGTTTCTTCTTCCAGTGTTAGGAATGGGC
TAACAATGGATCATTAGGTCAAGAAGAAACAAGATAATTGTTGACCTTCTGAGATGAAAG
GGAATACCAGAAATATTACTAAACAAATTTGGCAGATAGCCTGAATAGATGTTTACTTCT
ATACACAGGACAGTGTACAATTTTTTGTAAAGCCTGTTGTTTTTGGAAGTATTTATGGTG
AGCTTTCTTAAAAATTATTATAGTATGTACTTCCGAAATCCAACGTATTCTTTTTTTTTT
TAAGCTTTATCATTTTTATTTTTCATGGTAAAAATTTGATACTGGGGTAGATATTCCCTG
TACCTTATAGTACCATTCCTCCAAATAATCTTCTATTAAAGGAGGCAAAGAACCATGGTT
GAGAATAGTTAAGCTGTGCATGAAATGGCCAGGAGTGTAAAATATGTAGTATGTAGATCT
CAGCTTCATAGAAACTCTGCTTTTCTGGCTAAAATTGTTGTTTACCTGGTCTTTGAATTT
TATTGCCTGGCTAATTAGGTCATTACCTAAATCAGTTTTTGTCTTACCCCATCAAGAGTA
CTTTCTCTTGCCTACACTTGGCGTGATCCCATAAGAAGGAAAAAATACTGGAGATGTTCT
ATATTTTATATATAGGTTTTGTGTATTGTTGGGGATGTTTTTATTGTACTGTTTTGGACA
AAATAAAGAATTCTCTGTTAAGGCTACATTCTTAACCCAACTGAGATTGTTTACAAAAAA
TCTATATTACAACGATACATTGTTCTTATTCCAAAATATTTTTAGATATTGCCAAATGTC
TTATTAAAAACAGTTAGTATAGTTTTTACACATCGTAAGCAATAAAGTAGAAGATGAGAA
AAGGCTATAAAATGATGATCTATGACTCAAATCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCTTGGTCTTGTACATTTAAATTTAATTTAATTTTCTAAACAAAAAAGGGTTTGGG
AAAGAATTCTCCTTTTTACTCTGTAAGTCCTGCAACTGATGTTTTATTTTTCATGACTGA
GAGATTGTGTCTATAAGTGCACAATGACATGGTGGAACAAAATAGAAACTTTGAGACTTA
GGGAGAACCAGTTAACTTAAAACTTATTTTCAGTTTCTTCTTCCAGTGTTAGGAATGGGC
TAACAATGGATCATTAGGTCAAGAAGAAACAAGATAATTGTTGACCTTCTGAGATGAAAG
GGAATACCAGAAATATTACTAAACAAATTTGGCAGATAGCCTGAATAGATGTTTACTTCT
ATACACAGGACAGTGTACAATTTTTTGTAAAGCCTGTTGTTTTTGGAAGTATTTATGGTG
AGCTTTCTTAAAAATTATTATAGTATGTACTTCCGAAATCCAACGTATTCTTTTTTTTTT
TAAGCTTTATCATTTTTATTTTTCATGGTAAAAATTTGATACTGGGGTAGATATTCCCTG
TACCTTATAGTACCATTCCTCCAAATAATCTTCTATTAAAGGAGGCAAAGAACCATGGTT
GAGAATAGTTAAGCTGTGCATGAAATGGCCAGGAGTGTAAAATATGTAGTATGTAGATCT
CAGCTTCATAGAAACTCTGCTTTTCTGGCTAAAATTGTTGTTTACCTGGTCTTTGAATTT
TATTGCCTGGCTAATTAGGTCATTACCTAAATCAGTTTTTGTCTTACCCCATCAAGAGTA
CTTTCTCTTGCCTACACTTGGCGTGATCCCATAAGAAGGAAAAAATACTGGAGATGTTCT
ATATTTTATATATAGGTTTTGTGTATTGTTGGGGATGTTTTTATTGTACTGTTTTGGACA
AAATAAAGAATTCTCTGTTAAGGCTACATTCTTAACCCAACTGAGATTGTTTACAAAAAA
TCTATATTACAACGATACATTGTTCTTATTCCAAAATATTTTTAGATATTGCCAAATGTC
TTATTAAAAACAGTTAGTATAGTTTTTACACATCGTAAGCAATAAAGTAGAAGATGAGAA
AAGGCTATAAAATGATGATCTATGACTCAAATCTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               485-600, - strand, RNAz p=0.982638
               

               
               755-953, - strand, RNAz p=0.656688

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               485-600, - strand, RNAz p=0.982638
               

               
               755-953, - strand, RNAz p=0.656688

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1114, gnl|bosTau2|chr29 (29027066-29028184)
               

               
               1-1114, gnl|Hg17|chr11 (129609056-129607654)
               

               
               1-1114, gnl|Mm7|chr9 (30968630-30969653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1114, gnl|bosTau2|chr29 (29027066-29028184)
               

               
               1-1114, gnl|Hg17|chr11 (129609056-129607654)
               

               
               1-1114, gnl|Mm7|chr9 (30968630-30969653)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

	485-600, - strand, RNAz p=0.982638
	755-953, - strand, RNAz p=0.656688

	1-1114, gnl\|bosTau2\|chr29 (29027066-29028184)
	1-1114, gnl\|Hg17\|chr11 (129609056-129607654)
	1-1114, gnl\|Mm7\|chr9 (30968630-30969653)

	tbr (0.308356)
	fce (0.271592)
	tes (0.207814)
	hyp (0.142837)
	kid (0.129735)
	ldo (0.0970026)