Non-Coding RNA Search

Ss1.1-Pig4-TMW8015C15.5

Sequence:


               
               GGAATTCCTCAGTGCTGATATTTGTACTTGAAATGGGTACATGGAACATTTTTGGTAATC
TTTATTCCTAGAATCTAATTCTCTCAGTGTTACCAAATTGTCGGTGAAATAGCGCTAGGA
TTTTAGGAAATGGAAAGATAAGCTAATGAGTATTTTGCTTCGGTGGTGCCAGGGATTGGC
TGACCTAAGGAGCAGCATCCAGGTTCTCAGTATGCCCTGTATTTGTGTAGTGAACTAGAT
CTGAGGATTCCTCTTCAGGTTTTACTTCTAAATGTATGCTGAAAGAGTCTCTTGCTCTAA
AATTCTTGATATTTGGAACTTCAGTTAACAAATTTGAAAAGTAAAGATTTGCATTATAAA
TTGTACCTCAGATTTGAGAAATTTTTCTGTTAATTCAAAGTTAAAAGCAGTCCACACTAG
TGCAGTATAATACTGCTGACTAGTTCTACCAAACATTGTAATACCAATTTTAAACAAAAG
AAGTCAAGGAAAAAGCTGATTGCTAGAGTAGTAAATGTAAGAAATCTTTAAAAACAGCAA
AGGGCAAGGAAAGAGAAGTCACCAGACACCCAGGGGGAATCCCTGAGCCAAAAAAGTTTT
TTAATGTAATACTGAATTGTATTGAAACTAAGTGGCCCACTGTCTACCATCTGAAAGCTT
TTATCACTAAATTTATTCAGTTTCTGCTATTGGGAGATTATCCACATCCCTTCATAATTA
AGGGCCAACAAATAATAGGATTTTCTTAGAGCCAACATTGCTCTTTCCAAAGGGAGAAAG
TAATACCTCATTAACCTGGAATTTGTGGTACACCCTTGGTTAATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTCCTCAGTGCTGATATTTGTACTTGAAATGGGTACATGGAACATTTTTGGTAATC
TTTATTCCTAGAATCTAATTCTCTCAGTGTTACCAAATTGTCGGTGAAATAGCGCTAGGA
TTTTAGGAAATGGAAAGATAAGCTAATGAGTATTTTGCTTCGGTGGTGCCAGGGATTGGC
TGACCTAAGGAGCAGCATCCAGGTTCTCAGTATGCCCTGTATTTGTGTAGTGAACTAGAT
CTGAGGATTCCTCTTCAGGTTTTACTTCTAAATGTATGCTGAAAGAGTCTCTTGCTCTAA
AATTCTTGATATTTGGAACTTCAGTTAACAAATTTGAAAAGTAAAGATTTGCATTATAAA
TTGTACCTCAGATTTGAGAAATTTTTCTGTTAATTCAAAGTTAAAAGCAGTCCACACTAG
TGCAGTATAATACTGCTGACTAGTTCTACCAAACATTGTAATACCAATTTTAAACAAAAG
AAGTCAAGGAAAAAGCTGATTGCTAGAGTAGTAAATGTAAGAAATCTTTAAAAACAGCAA
AGGGCAAGGAAAGAGAAGTCACCAGACACCCAGGGGGAATCCCTGAGCCAAAAAAGTTTT
TTAATGTAATACTGAATTGTATTGAAACTAAGTGGCCCACTGTCTACCATCTGAAAGCTT
TTATCACTAAATTTATTCAGTTTCTGCTATTGGGAGATTATCCACATCCCTTCATAATTA
AGGGCCAACAAATAATAGGATTTTCTTAGAGCCAACATTGCTCTTTCCAAAGGGAGAAAG
TAATACCTCATTAACCTGGAATTTGTGGTACACCCTTGGTTAATGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-151, + strand, RNAz p=0.99851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-151, + strand, RNAz p=0.99851

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               65-149, + strand, RNAmicro p=0.991245

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               65-149, + strand, RNAmicro p=0.991245

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               44-828, gnl|bosTau2|chr1 (30599269-30598488)
               

               
               44-828, gnl|Hg17|chr3 (121529912-121528467)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-828, gnl|bosTau2|chr1 (30599269-30598488)
               

               
               44-828, gnl|Hg17|chr3 (121529912-121528467)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               lun (0.150489)
               

               
               csk (0.140746)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               csk (0.140746)

	44-828, gnl\|bosTau2\|chr1 (30599269-30598488)
	44-828, gnl\|Hg17\|chr3 (121529912-121528467)