Non-Coding RNA Search

Ss1.1-Pig4-TMW8015E16.5

Sequence:


               
               GCATATCCTGCTCTAATGGGCAAGACCCAAGGCTTAAAGGAGAACGTCCCTTCTCTAATA
ATAGGACCTGGGACTCCTAGGATGAGAAGCTGGTTATCTGCAGGGTTACCCTGCAGTTGT
GGTTGGGAGAGGTTTATTTTCTTGGAACTAAACTGAGGAAGTCACTAGAAGTGAGCCCTG
TCCCCAGCTTAACACTGGGGAGGTTAGGGGCTGGCTGCGGTGTCCAGCCTTCAGGAATAG
CTGTGCCCTGCACTTCTCTTGTTGGGCTGGGTCTTTTGCTGCCTAGTACCTCACATATTT
AACCACTTTAACCAGTCTAAGTTAGTGTCATTTCAGAATGGGATACTCAGACAGGTTGTG
TTTAAAGTCACTGAACACTGAGCTAGTCTCTCTTTTAGAGTCTTCGATGAATCCATTCCT
GGATCTGACAGTCCAGTCTGCAGAGGCAACCATCTTTGAAAAAGGAAAAAGCAAAGAAAC
TGTAGGGAAAAAAATCCCTAGCTGGGAACACAGAGAATGATTTGCAAGATCACTGAAATG
CTTCCTGCGACTTCCTCTTGTCTTGCATGCCCACCTGATGATAGGAAATCTTGGAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATATCCTGCTCTAATGGGCAAGACCCAAGGCTTAAAGGAGAACGTCCCTTCTCTAATA
ATAGGACCTGGGACTCCTAGGATGAGAAGCTGGTTATCTGCAGGGTTACCCTGCAGTTGT
GGTTGGGAGAGGTTTATTTTCTTGGAACTAAACTGAGGAAGTCACTAGAAGTGAGCCCTG
TCCCCAGCTTAACACTGGGGAGGTTAGGGGCTGGCTGCGGTGTCCAGCCTTCAGGAATAG
CTGTGCCCTGCACTTCTCTTGTTGGGCTGGGTCTTTTGCTGCCTAGTACCTCACATATTT
AACCACTTTAACCAGTCTAAGTTAGTGTCATTTCAGAATGGGATACTCAGACAGGTTGTG
TTTAAAGTCACTGAACACTGAGCTAGTCTCTCTTTTAGAGTCTTCGATGAATCCATTCCT
GGATCTGACAGTCCAGTCTGCAGAGGCAACCATCTTTGAAAAAGGAAAAAGCAAAGAAAC
TGTAGGGAAAAAAATCCCTAGCTGGGAACACAGAGAATGATTTGCAAGATCACTGAAATG
CTTCCTGCGACTTCCTCTTGTCTTGCATGCCCACCTGATGATAGGAAATCTTGGAGGGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               152-261, - strand, RNAz p=0.812227
               

               
               459-569, - strand, RNAz p=0.993793

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-261, - strand, RNAz p=0.812227
               

               
               459-569, - strand, RNAz p=0.993793

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr17 (32208301-32208883)
               

               
               1-592, gnl|Hg17|chr12 (116965470-116964866)
               

               
               1-592, gnl|Mm7|chr5 (116583563-116584059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr17 (32208301-32208883)
               

               
               1-592, gnl|Hg17|chr12 (116965470-116964866)
               

               
               1-592, gnl|Mm7|chr5 (116583563-116584059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	152-261, - strand, RNAz p=0.812227
	459-569, - strand, RNAz p=0.993793

	1-592, gnl\|bosTau2\|chr17 (32208301-32208883)
	1-592, gnl\|Hg17\|chr12 (116965470-116964866)
	1-592, gnl\|Mm7\|chr5 (116583563-116584059)