Ss1.1-Pig4-TMW8015E18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGGATGCGTCCATCCATCTCAAGGTCTTCGCAAAACCCAAAATCACTTACGTAGAGA ACCAGACAGCAATGGAACTGGAGGAGCAGGTCACTCTTACCTGTGAAGCCTCAGGAGACC CCATTCCTTCAATCACCTGGAGAACTTCCACCCGAAACATCAGCAGCGAAGAAAAGACCC TGGACGGGCACATGGTGGTGCGCAGCCACGCCCGCGTGTCGTCACTGACCCTGAAGAGCA TCCAGTACACGGACGCTGGGGAGTACGTCTGCACGGCCAGCAACACCATCGGCCAGGACT CCCAGTCCATGTACCTCGAAGTGCAATATGCCCCCAAGCTGCAGGGCCCTGTGGCTGTGT ACACGTGGGAGGGGAACCAGGTGAATATCACCTGCGAGGTGTTTGCCTACCCCAGCGCCA CAATCTCATGGTTCCGCGATGGGCAGCTGTTGCCCAGCTCCAACTATAGCAACATCAAGA TCTACAACACCCCATCGGCCAGCTATCTGGAGGTGACCCCGGACTCTGAAAATGATTTTG GAAACTACAACTGTACTGCCGTGAACCGCATTGGACAGGAGTCCCTGGAATTCATCCTTG TCCAAGCAGACACCCCATCCTCACCGTCCATCGACCAGGTGGAGCCATACTCCAGCACAG CGCAGGTGCAGTTTGATGAGCCAGAGGCCACAGGCGGGGTGCCCATCCTCAAGTACAAGG CCGAGTGGAGAGCAGTGGGCGAGGAAGTCTGGCACTCCAAGTGGTATGATGCCAAAGAAG CCAGCCTGGAGGGCCTTGTCACCATCGTGGGCCTGAAGCCCGAGACGATGTACGCGGTCC GACTGGCGGCCCTCAACGGCAAGGGCCTAGGCGAGATCAGCGCCGCCTCCGAGTTCAAGA CGCAGCCAGTCCGGGAACCCAGCGCACCTAAGCTCGAAGGGCAGATGGGAGAAGACGGCA ACTCCATTAAGGTGAACCTAATTAAGCAGGACGACGGCGGCTCCCCCATCAGACACTACC TGGTCAAATACCGAGCGAAGCTCTCCTCCGAGTGGAAACCAGAGATCAGGCTCCCCTCTG GCAGTGACCACGTCATGCTCAAGTCCCTGGACTGGAATGCTGAGTACGAGGTCTACGTGG TGGCTGAGAACCAGCAGGGGAAGTCCAAGGCGGCTCACTTCGTGTTCAGGACCTCAGCGC AGCCCACGGCCATCCCAGCCAACGGCAGCCCCACCTCAGGTCTGAGCACTGGCGCCATCG TGGGCATCCTTGTCGTCACCTTGTCCTGCTCCTGGTGGCTGTGGATGTCACCTGCTACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGGATGCGTCCATCCATCTCAAGGTCTTCGCAAAACCCAAAATCACTTACGTAGAGA ACCAGACAGCAATGGAACTGGAGGAGCAGGTCACTCTTACCTGTGAAGCCTCAGGAGACC CCATTCCTTCAATCACCTGGAGAACTTCCACCCGAAACATCAGCAGCGAAGAAAAGACCC TGGACGGGCACATGGTGGTGCGCAGCCACGCCCGCGTGTCGTCACTGACCCTGAAGAGCA TCCAGTACACGGACGCTGGGGAGTACGTCTGCACGGCCAGCAACACCATCGGCCAGGACT CCCAGTCCATGTACCTCGAAGTGCAATATGCCCCCAAGCTGCAGGGCCCTGTGGCTGTGT ACACGTGGGAGGGGAACCAGGTGAATATCACCTGCGAGGTGTTTGCCTACCCCAGCGCCA CAATCTCATGGTTCCGCGATGGGCAGCTGTTGCCCAGCTCCAACTATAGCAACATCAAGA TCTACAACACCCCATCGGCCAGCTATCTGGAGGTGACCCCGGACTCTGAAAATGATTTTG GAAACTACAACTGTACTGCCGTGAACCGCATTGGACAGGAGTCCCTGGAATTCATCCTTG TCCAAGCAGACACCCCATCCTCACCGTCCATCGACCAGGTGGAGCCATACTCCAGCACAG CGCAGGTGCAGTTTGATGAGCCAGAGGCCACAGGCGGGGTGCCCATCCTCAAGTACAAGG CCGAGTGGAGAGCAGTGGGCGAGGAAGTCTGGCACTCCAAGTGGTATGATGCCAAAGAAG CCAGCCTGGAGGGCCTTGTCACCATCGTGGGCCTGAAGCCCGAGACGATGTACGCGGTCC GACTGGCGGCCCTCAACGGCAAGGGCCTAGGCGAGATCAGCGCCGCCTCCGAGTTCAAGA CGCAGCCAGTCCGGGAACCCAGCGCACCTAAGCTCGAAGGGCAGATGGGAGAAGACGGCA ACTCCATTAAGGTGAACCTAATTAAGCAGGACGACGGCGGCTCCCCCATCAGACACTACC TGGTCAAATACCGAGCGAAGCTCTCCTCCGAGTGGAAACCAGAGATCAGGCTCCCCTCTG GCAGTGACCACGTCATGCTCAAGTCCCTGGACTGGAATGCTGAGTACGAGGTCTACGTGG TGGCTGAGAACCAGCAGGGGAAGTCCAAGGCGGCTCACTTCGTGTTCAGGACCTCAGCGC AGCCCACGGCCATCCCAGCCAACGGCAGCCCCACCTCAGGTCTGAGCACTGGCGCCATCG TGGGCATCCTTGTCGTCACCTTGTCCTGCTCCTGGTGGCTGTGGATGTCACCTGCTACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 328-446, + strand, RNAz p=0.928195 | |
| 646-780, + strand, RNAz p=0.938221 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 328-446, + strand, RNAz p=0.928195 | |
| 646-780, + strand, RNAz p=0.938221 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 27-176, gnl|bosTau2|chr15 (10141962-10142112) | |
| 27-176, gnl|canFam2|chr5 (22957415-22957241) | |
| 27-176, gnl|danRer3|chr19 (51648488-51648315) | |
| 27-176, gnl|dasNov1|scaffold_1153 (91886-92060) | |
| 27-176, gnl|echTel1|scaffold_286004 (45338-45163) | |
| 27-176, gnl|fr1|chrUn (229027625-229027472) | |
| 27-176, gnl|galGal2|chr24 (5486074-5485912) | |
| 27-176, gnl|hg17|chr11 (112590277-112590451) | |
| 27-176, gnl|Hg17|chr11 (112590293-112590443) | |
| 27-176, gnl|mm7|chr9 (49532508-49532331) | |
| 27-176, gnl|Mm7|chr9 (49532490-49532337) | |
| 27-176, gnl|monDom2|scaffold_2 (127859581-127859406) | |
| 27-176, gnl|oryCun1|scaffold_215336 (98757-98931) | |
| 27-176, gnl|panTro1|chr9 (114592070-114592244) | |
| 27-176, gnl|rheMac2|chr14 (111690282-111690456) | |
| 27-176, gnl|rn3|chr8 (52893121-52892943) | |
| 27-176, gnl|tetNig1|chr16 (3061316-3061467) | |
| 27-176, gnl|xenTro1|scaffold_300 (1372867-1372705) | |
| 328-516, gnl|bosTau2|chr15 (10153143-10153331) | |
| 328-516, gnl|canFam2|chr5 (22946328-22946127) | |
| 328-516, gnl|danRer3|chr19 (51606389-51606188) | |
| 328-516, gnl|dasNov1|scaffold_1153 (102610-102810) | |
| 328-516, gnl|echTel1|scaffold_319785 (50321-50121) | |
| 328-516, gnl|fr1|chrUn (7644411-7644611) | |
| 328-516, gnl|galGal2|chr24 (5477998-5477786) | |
| 328-516, gnl|hg17|chr11 (112608094-112608295) | |
| 328-516, gnl|Hg17|chr11 (112608102-112608290) | |
| 328-516, gnl|loxAfr1|scaffold_5802 (18632-18431) | |
| 328-516, gnl|mm7|chr9 (49521034-49520833) | |
| 328-516, gnl|Mm7|chr9 (49521024-49520836) | |
| 328-516, gnl|monDom2|scaffold_2 (127846434-127846236) | |
| 328-516, gnl|oryCun1|scaffold_215336 (109975-110176) | |
| 328-516, gnl|panTro1|chr9 (114609786-114609987) | |
| 328-516, gnl|rheMac2|chr14 (111701604-111701805) | |
| 328-516, gnl|rn3|chr8 (52882154-52881953) | |
| 328-516, gnl|tetNig1|chr16 (3069662-3069862) | |
| 328-516, gnl|xenTro1|scaffold_300 (1357542-1357337) | |
| 607-780, gnl|bosTau2|chr15 (10154275-10154448) | |
| 607-780, gnl|canFam2|chr5 (22945364-22945241) | |
| 607-780, gnl|danRer3|chr19 (51563979-51563856) | |
| 607-780, gnl|echTel1|scaffold_319785 (49214-49091) | |
| 607-780, gnl|fr1|chrUn (7646129-7646252) | |
| 607-780, gnl|galGal2|chr24 (5477031-5476908) | |
| 607-780, gnl|hg17|chr11 (112609077-112609200) | |
| 607-780, gnl|Hg17|chr11 (112609076-112609249) | |
| 607-780, gnl|mm7|chr9 (49520066-49519943) | |
| 607-780, gnl|Mm7|chr9 (49520065-49519892) | |
| 607-780, gnl|monDom2|scaffold_2 (127844920-127844797) | |
| 607-780, gnl|oryCun1|scaffold_215336 (110987-111110) | |
| 607-780, gnl|panTro1|chr9 (114610769-114610892) | |
| 607-780, gnl|rheMac2|chr14 (111702557-111702680) | |
| 607-780, gnl|rn3|chr8 (52881195-52881072) | |
| 607-780, gnl|tetNig1|chr16 (3071034-3071157) | |
| 607-780, gnl|xenTro1|scaffold_300 (1355868-1355745) | |
| 1037-1218, gnl|bosTau2|chr15 (10202785-10202966) | |
| 1037-1218, gnl|canFam2|chr5 (22922227-22921990) | |
| 1037-1218, gnl|danRer3|chr19 (51515280-51515075) | |
| 1037-1218, gnl|echTel1|scaffold_286004 (6376-6142) | |
| 1037-1218, gnl|fr1|chrUn (7654055-7654271) | |
| 1037-1218, gnl|galGal2|chr24 (5464303-5464084) | |
| 1037-1218, gnl|hg17|chr11 (112636021-112636259) | |
| 1037-1218, gnl|Hg17|chr11 (112636074-112636255) | |
| 1037-1218, gnl|mm7|chr9 (49495510-49495274) | |
| 1037-1218, gnl|Mm7|chr9 (49495457-49495276) | |
| 1037-1218, gnl|monDom2|scaffold_2 (127815074-127814843) | |
| 1037-1218, gnl|oryCun1|scaffold_215336 (136922-137160) | |
| 1037-1218, gnl|panTro1|chr9 (114637115-114637353) | |
| 1037-1218, gnl|rheMac2|chr14 (111728985-111729228) | |
| 1037-1218, gnl|rn3|chr8 (52856391-52856155) | |
| 1037-1218, gnl|tetNig1|chr16 (3074016-3074213) | |
| 1037-1218, gnl|xenTro1|scaffold_300 (1339877-1339645) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-176, gnl|bosTau2|chr15 (10141962-10142112) | |
| 27-176, gnl|canFam2|chr5 (22957415-22957241) | |
| 27-176, gnl|danRer3|chr19 (51648488-51648315) | |
| 27-176, gnl|dasNov1|scaffold_1153 (91886-92060) | |
| 27-176, gnl|echTel1|scaffold_286004 (45338-45163) | |
| 27-176, gnl|fr1|chrUn (229027625-229027472) | |
| 27-176, gnl|galGal2|chr24 (5486074-5485912) | |
| 27-176, gnl|hg17|chr11 (112590277-112590451) | |
| 27-176, gnl|Hg17|chr11 (112590293-112590443) | |
| 27-176, gnl|mm7|chr9 (49532508-49532331) | |
| 27-176, gnl|Mm7|chr9 (49532490-49532337) | |
| 27-176, gnl|monDom2|scaffold_2 (127859581-127859406) | |
| 27-176, gnl|oryCun1|scaffold_215336 (98757-98931) | |
| 27-176, gnl|panTro1|chr9 (114592070-114592244) | |
| 27-176, gnl|rheMac2|chr14 (111690282-111690456) | |
| 27-176, gnl|rn3|chr8 (52893121-52892943) | |
| 27-176, gnl|tetNig1|chr16 (3061316-3061467) | |
| 27-176, gnl|xenTro1|scaffold_300 (1372867-1372705) | |
| 328-516, gnl|bosTau2|chr15 (10153143-10153331) | |
| 328-516, gnl|canFam2|chr5 (22946328-22946127) | |
| 328-516, gnl|danRer3|chr19 (51606389-51606188) | |
| 328-516, gnl|dasNov1|scaffold_1153 (102610-102810) | |
| 328-516, gnl|echTel1|scaffold_319785 (50321-50121) | |
| 328-516, gnl|fr1|chrUn (7644411-7644611) | |
| 328-516, gnl|galGal2|chr24 (5477998-5477786) | |
| 328-516, gnl|hg17|chr11 (112608094-112608295) | |
| 328-516, gnl|Hg17|chr11 (112608102-112608290) | |
| 328-516, gnl|loxAfr1|scaffold_5802 (18632-18431) | |
| 328-516, gnl|mm7|chr9 (49521034-49520833) | |
| 328-516, gnl|Mm7|chr9 (49521024-49520836) | |
| 328-516, gnl|monDom2|scaffold_2 (127846434-127846236) | |
| 328-516, gnl|oryCun1|scaffold_215336 (109975-110176) | |
| 328-516, gnl|panTro1|chr9 (114609786-114609987) | |
| 328-516, gnl|rheMac2|chr14 (111701604-111701805) | |
| 328-516, gnl|rn3|chr8 (52882154-52881953) | |
| 328-516, gnl|tetNig1|chr16 (3069662-3069862) | |
| 328-516, gnl|xenTro1|scaffold_300 (1357542-1357337) | |
| 607-780, gnl|bosTau2|chr15 (10154275-10154448) | |
| 607-780, gnl|canFam2|chr5 (22945364-22945241) | |
| 607-780, gnl|danRer3|chr19 (51563979-51563856) | |
| 607-780, gnl|echTel1|scaffold_319785 (49214-49091) | |
| 607-780, gnl|fr1|chrUn (7646129-7646252) | |
| 607-780, gnl|galGal2|chr24 (5477031-5476908) | |
| 607-780, gnl|hg17|chr11 (112609077-112609200) | |
| 607-780, gnl|Hg17|chr11 (112609076-112609249) | |
| 607-780, gnl|mm7|chr9 (49520066-49519943) | |
| 607-780, gnl|Mm7|chr9 (49520065-49519892) | |
| 607-780, gnl|monDom2|scaffold_2 (127844920-127844797) | |
| 607-780, gnl|oryCun1|scaffold_215336 (110987-111110) | |
| 607-780, gnl|panTro1|chr9 (114610769-114610892) | |
| 607-780, gnl|rheMac2|chr14 (111702557-111702680) | |
| 607-780, gnl|rn3|chr8 (52881195-52881072) | |
| 607-780, gnl|tetNig1|chr16 (3071034-3071157) | |
| 607-780, gnl|xenTro1|scaffold_300 (1355868-1355745) | |
| 1037-1218, gnl|bosTau2|chr15 (10202785-10202966) | |
| 1037-1218, gnl|canFam2|chr5 (22922227-22921990) | |
| 1037-1218, gnl|danRer3|chr19 (51515280-51515075) | |
| 1037-1218, gnl|echTel1|scaffold_286004 (6376-6142) | |
| 1037-1218, gnl|fr1|chrUn (7654055-7654271) | |
| 1037-1218, gnl|galGal2|chr24 (5464303-5464084) | |
| 1037-1218, gnl|hg17|chr11 (112636021-112636259) | |
| 1037-1218, gnl|Hg17|chr11 (112636074-112636255) | |
| 1037-1218, gnl|mm7|chr9 (49495510-49495274) | |
| 1037-1218, gnl|Mm7|chr9 (49495457-49495276) | |
| 1037-1218, gnl|monDom2|scaffold_2 (127815074-127814843) | |
| 1037-1218, gnl|oryCun1|scaffold_215336 (136922-137160) | |
| 1037-1218, gnl|panTro1|chr9 (114637115-114637353) | |
| 1037-1218, gnl|rheMac2|chr14 (111728985-111729228) | |
| 1037-1218, gnl|rn3|chr8 (52856391-52856155) | |
| 1037-1218, gnl|tetNig1|chr16 (3074016-3074213) | |
| 1037-1218, gnl|xenTro1|scaffold_300 (1339877-1339645) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| med (0.116252) |