Non-Coding RNA Search

Ss1.1-Pig4-TMW8015F08.5

Sequence:


               
               TATAATTCATCTTCCCATTCCTTTACTTAGCATGTTTGTGCAAACATTTCTTAACTGTGC
ATCAGAAGGGAGTCCTCAGTCACCAGCTCTTCCTTCCTCCCCTTCTCCCATTCTTCCCTG
CTTTGTATCTTGTTGCTTGCAAGTCCTTTTGTATGCTGAGCTATCCAGCTGGTTTCACCT
GCTCCTAAAGCAGGTCCCTACCACGTGACAAGGTGCTTTGGATGAGGCCCGGATCGTAGT
ATTCTGCAGGATGCTACCCTGCAGGGTGATGACCTTGGAAGATGTCGCACTGTTTGAGTG
CACTCAAACAGTCCAGTGAGCATTGTGATAGTTGTTCTCTCTGATTGCAGTTTCTTATAT
TTTGAACTTAAAGTTGACTTTCAGAGTGTTTGTAGAACAGAGCTAGACTTTTTTCCTTTG
TGGACCTGCTTTGTTTGGCTGCTGGGATAGATAAGCATGGGTTAAAAATGTGTTCTTCCC
AATTTTCCAGCCTTTCCCATGGTACTCTGAATTCCTTCCCCCTCCCTCCCTCCCTTTCTC
TTTCCCCTTTCTCTGCAAGGCCATTTTTCAGATGTACATCCAGGATACCTCAAGTGTTGG
TATCTGATAATATCTGGCCCTCCTCTTATCTGAGGAGTGACCTTTTATTTTTAAGATGAG
TACAGACCTATTTTTAGATATGTTTTCAGTACAATTTTGAACAGCAACTTTTTACTTATA
CATCTTCCAGTGTTGGGAAGGTGAGAAATGTCCTTAGGCGAGTCTGCTGTTCCATGTCAC
CTACCTTTGTCTCCCCAGTCCCTTATGAGCTCTTTTCTTCTCCCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAATTCATCTTCCCATTCCTTTACTTAGCATGTTTGTGCAAACATTTCTTAACTGTGC
ATCAGAAGGGAGTCCTCAGTCACCAGCTCTTCCTTCCTCCCCTTCTCCCATTCTTCCCTG
CTTTGTATCTTGTTGCTTGCAAGTCCTTTTGTATGCTGAGCTATCCAGCTGGTTTCACCT
GCTCCTAAAGCAGGTCCCTACCACGTGACAAGGTGCTTTGGATGAGGCCCGGATCGTAGT
ATTCTGCAGGATGCTACCCTGCAGGGTGATGACCTTGGAAGATGTCGCACTGTTTGAGTG
CACTCAAACAGTCCAGTGAGCATTGTGATAGTTGTTCTCTCTGATTGCAGTTTCTTATAT
TTTGAACTTAAAGTTGACTTTCAGAGTGTTTGTAGAACAGAGCTAGACTTTTTTCCTTTG
TGGACCTGCTTTGTTTGGCTGCTGGGATAGATAAGCATGGGTTAAAAATGTGTTCTTCCC
AATTTTCCAGCCTTTCCCATGGTACTCTGAATTCCTTCCCCCTCCCTCCCTCCCTTTCTC
TTTCCCCTTTCTCTGCAAGGCCATTTTTCAGATGTACATCCAGGATACCTCAAGTGTTGG
TATCTGATAATATCTGGCCCTCCTCTTATCTGAGGAGTGACCTTTTATTTTTAAGATGAG
TACAGACCTATTTTTAGATATGTTTTCAGTACAATTTTGAACAGCAACTTTTTACTTATA
CATCTTCCAGTGTTGGGAAGGTGAGAAATGTCCTTAGGCGAGTCTGCTGTTCCATGTCAC
CTACCTTTGTCTCCCCAGTCCCTTATGAGCTCTTTTCTTCTCCCTCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               535-717, - strand, RNAz p=0.983169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-717, - strand, RNAz p=0.983169

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               548-714, DB194862 TRACH2 Homo sapiens cDNA clone TRACH2000321 5', mRNA 
(dbj|DB194862.1|), blast E-value=0, identity=92.81% 
               

               
               548-714, ILLUMIGEN_MCQ_7920 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW 
(gb|CN643437.1|), blast E-value=0, identity=93.41% 
               

               
               542-714, 000215BCEB007247HT BCEB Bos taurus cDNA, mRNA sequence 
(gb|DY118101.1|), blast E-value=0, identity=94.8% 
               

               
               542-714, 000206BPSA999076HT BPSA Bos taurus cDNA, mRNA sequence 
(gb|DY189669.1|), blast E-value=0, identity=94.8% 
               

               
               542-714, 1588569 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY458435.1|), 
blast E-value=0, identity=94.8% 
               

               
               542-714, LB02936.CR_J06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE350584.1|), 
blast E-value=0, identity=94.8%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               548-714, DB194862 TRACH2 Homo sapiens cDNA clone TRACH2000321 5', mRNA 
(dbj|DB194862.1|), blast E-value=0, identity=92.81% 
               

               
               548-714, ILLUMIGEN_MCQ_7920 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW 
(gb|CN643437.1|), blast E-value=0, identity=93.41% 
               

               
               542-714, 000215BCEB007247HT BCEB Bos taurus cDNA, mRNA sequence 
(gb|DY118101.1|), blast E-value=0, identity=94.8% 
               

               
               542-714, 000206BPSA999076HT BPSA Bos taurus cDNA, mRNA sequence 
(gb|DY189669.1|), blast E-value=0, identity=94.8% 
               

               
               542-714, 1588569 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY458435.1|), 
blast E-value=0, identity=94.8% 
               

               
               542-714, LB02936.CR_J06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE350584.1|), 
blast E-value=0, identity=94.8%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-826, gnl|bosTau2|chr28 (20609367-20608553)
               

               
               1-826, gnl|Hg17|chr10 (71852189-71853051)
               

               
               1-826, gnl|Mm7|chr10 (60950830-60949993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-826, gnl|bosTau2|chr28 (20609367-20608553)
               

               
               1-826, gnl|Hg17|chr10 (71852189-71853051)
               

               
               1-826, gnl|Mm7|chr10 (60950830-60949993)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               elu (0.385356)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	548-714, DB194862 TRACH2 Homo sapiens cDNA clone TRACH2000321 5', mRNA (dbj\|DB194862.1\|), blast E-value=0, identity=92.81%
	548-714, ILLUMIGEN_MCQ_7920 Katze_MMPL2 Macaca mulatta cDNA clone IBIUW (gb\|CN643437.1\|), blast E-value=0, identity=93.41%
	542-714, 000215BCEB007247HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY118101.1\|), blast E-value=0, identity=94.8%
	542-714, 000206BPSA999076HT BPSA Bos taurus cDNA, mRNA sequence (gb\|DY189669.1\|), blast E-value=0, identity=94.8%
	542-714, 1588569 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY458435.1\|), blast E-value=0, identity=94.8%
	542-714, LB02936.CR_J06 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE350584.1\|), blast E-value=0, identity=94.8%

	1-826, gnl\|bosTau2\|chr28 (20609367-20608553)
	1-826, gnl\|Hg17\|chr10 (71852189-71853051)
	1-826, gnl\|Mm7\|chr10 (60950830-60949993)

	elu (0.385356)
	nep (0.183925)
	eli (0.151814)
	cly (0.120642)
	ldo (0.0970026)