Non-Coding RNA Search

Ss1.1-Pig4-TMW8015G24.5

Sequence:


               
               GCAACTGTCCTAATTCGTTTATCGCCTGCGGGACGCCGAGGATTTCTGGGGTCTCTGCAG
AGCCCCTGCCTCAGGCCGCATCACTGAGGCTGCAGGATCTCCCTTCACACCCCAGCCCGA
CTCTTCCCAGCAGTTCTGATCGGACTGATCGGAGCCTCCTGATATCCACCCAACTCCAGG
CTCCTAGGAAAAGTGAAGCTGTCGGCAAAAGAGACCAAGAGTCGACGCCCAGAAGGGCCA
TGCTTGCTGATGGGAATTTGCCCCAGAGGCCCCAGGGCTTGGGTCCAGAGGAGCTGGATG
TGTCATGTGAGGTAAGCCAGAGCCTCAGGACCAGTTCTCAAGAACGGCCAGGGCAGAGGA
AGCTTCACTGGCCCACGAAGGAGGATGTGCTGGACCAAAGGGTTGGCCCCAGGGCAAAGG
AAGAAGAAAAGGCAGCCCTAGCCACAGGCAGGGGAATACTGCCTCCTTCCTGCTCAGCAC
TGGCGAAGACCCTTCAACCTCCATCCTCCATCCTCCGCTGGGCCTTTGCATGTTCTCAGC
TGATCCCCATCTGCCTCCTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACTGTCCTAATTCGTTTATCGCCTGCGGGACGCCGAGGATTTCTGGGGTCTCTGCAG
AGCCCCTGCCTCAGGCCGCATCACTGAGGCTGCAGGATCTCCCTTCACACCCCAGCCCGA
CTCTTCCCAGCAGTTCTGATCGGACTGATCGGAGCCTCCTGATATCCACCCAACTCCAGG
CTCCTAGGAAAAGTGAAGCTGTCGGCAAAAGAGACCAAGAGTCGACGCCCAGAAGGGCCA
TGCTTGCTGATGGGAATTTGCCCCAGAGGCCCCAGGGCTTGGGTCCAGAGGAGCTGGATG
TGTCATGTGAGGTAAGCCAGAGCCTCAGGACCAGTTCTCAAGAACGGCCAGGGCAGAGGA
AGCTTCACTGGCCCACGAAGGAGGATGTGCTGGACCAAAGGGTTGGCCCCAGGGCAAAGG
AAGAAGAAAAGGCAGCCCTAGCCACAGGCAGGGGAATACTGCCTCCTTCCTGCTCAGCAC
TGGCGAAGACCCTTCAACCTCCATCCTCCATCCTCCGCTGGGCCTTTGCATGTTCTCAGC
TGATCCCCATCTGCCTCCTCCTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61875968|ref|XP_591047.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61875968|ref|XP_591047.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               194-532, - strand, RNAz p=0.891765

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-532, - strand, RNAz p=0.891765

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               39-324, gnl|bosTau2|chr18 (50841359-50841635)
               

               
               39-324, gnl|Hg17|chr19 (56768212-56768477)
               

               
               39-324, gnl|Mm7|chr7 (39740283-39740548)
               


               
               355-563, gnl|bosTau2|chr18 (50841788-50841997)
               

               
               355-563, gnl|canFam2|chr1 (108399045-108398764)
               

               
               355-563, gnl|dasNov1|scaffold_45782 (1587-1936)
               

               
               355-563, gnl|echTel1|scaffold_246717 (2173-1858)
               

               
               355-563, gnl|hg17|chr19 (56768618-56768938)
               

               
               355-563, gnl|Hg17|chr19 (56768625-56768839)
               

               
               355-563, gnl|loxAfr1|scaffold_83892 (4785-4446)
               

               
               355-563, gnl|panTro1|chr20 (54196250-54196570)
               

               
               355-563, gnl|rheMac2|chr19 (57645687-57646002)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-324, gnl|bosTau2|chr18 (50841359-50841635)
               

               
               39-324, gnl|Hg17|chr19 (56768212-56768477)
               

               
               39-324, gnl|Mm7|chr7 (39740283-39740548)
               


               
               355-563, gnl|bosTau2|chr18 (50841788-50841997)
               

               
               355-563, gnl|canFam2|chr1 (108399045-108398764)
               

               
               355-563, gnl|dasNov1|scaffold_45782 (1587-1936)
               

               
               355-563, gnl|echTel1|scaffold_246717 (2173-1858)
               

               
               355-563, gnl|hg17|chr19 (56768618-56768938)
               

               
               355-563, gnl|Hg17|chr19 (56768625-56768839)
               

               
               355-563, gnl|loxAfr1|scaffold_83892 (4785-4446)
               

               
               355-563, gnl|panTro1|chr20 (54196250-54196570)
               

               
               355-563, gnl|rheMac2|chr19 (57645687-57646002)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               cag (0.151194)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cag (0.151194)
               

               
               pla (0.133672)

	39-324, gnl\|bosTau2\|chr18 (50841359-50841635)
	39-324, gnl\|Hg17\|chr19 (56768212-56768477)
	39-324, gnl\|Mm7\|chr7 (39740283-39740548)

	355-563, gnl\|bosTau2\|chr18 (50841788-50841997)
	355-563, gnl\|canFam2\|chr1 (108399045-108398764)
	355-563, gnl\|dasNov1\|scaffold_45782 (1587-1936)
	355-563, gnl\|echTel1\|scaffold_246717 (2173-1858)
	355-563, gnl\|hg17\|chr19 (56768618-56768938)
	355-563, gnl\|Hg17\|chr19 (56768625-56768839)
	355-563, gnl\|loxAfr1\|scaffold_83892 (4785-4446)
	355-563, gnl\|panTro1\|chr20 (54196250-54196570)
	355-563, gnl\|rheMac2\|chr19 (57645687-57646002)