Non-Coding RNA Search

Ss1.1-Pig4-TMW8015H03.5

Sequence:


               
               TTGTGTGACATGGATGTTCATTCCCTCTTTGGTGATAAGGAAGCACAGTGTCATGCTGGA
AATAAAAGATTGAAATACAAGATCTCCTGCTTAAAAACTTGTCAAAAGAGCAGCGCACCT
CGAAGGTTTTCCCCGGGGATGACGTGTGCGTCTAACTCCATTGCATAAAACCTTTTTTCC
ACCCCTCGTTTTAAAGCTTTGGGTATAAAGTCAGAAATGTGCTACATAAAAACAATGTTT
TGTGTTTGATTTAGAGAAGAATAAAGGGAAGAAAATGAAAACTCAGTCTTTAGGTTAAGC
TTCAAGTGTCAGGGCTTAGAGGGCTTTTCACATTTTATGAGAATTTGTACTACTGATTTT
TGTATATTCTTGTTTTTGAGATGAACAGATCTCGGGGAATTGTTGAGTTCCAATGAATGG
CGTTTCACTGTGATCCCTCTCCAGCTCACATCAGTTCTCTAACCTAAGGACGCCTTGTCT
TTGGTTTACTGTCCTGTGAAATGTCAGCTCCATTTCCCCAGAAGTTGTGTGTTTACGACG
AATCAGTGCTTTTCCTCAGTGAGTTGTCAGCCCTCTTAATTTTGGTGAATGTCCTTAATT
CCAAGTCTCTAAACCTGTAGTCCAATCTGTACTCGCGCTGTTACCTGTTAATTGTGTTAC
TGATTATTTTATCTTGCTTGAAGATTGATTCCTACTTTTTAATTTGATAGAAATAAAGTT
TTTTCCTTCTGCTTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTGACATGGATGTTCATTCCCTCTTTGGTGATAAGGAAGCACAGTGTCATGCTGGA
AATAAAAGATTGAAATACAAGATCTCCTGCTTAAAAACTTGTCAAAAGAGCAGCGCACCT
CGAAGGTTTTCCCCGGGGATGACGTGTGCGTCTAACTCCATTGCATAAAACCTTTTTTCC
ACCCCTCGTTTTAAAGCTTTGGGTATAAAGTCAGAAATGTGCTACATAAAAACAATGTTT
TGTGTTTGATTTAGAGAAGAATAAAGGGAAGAAAATGAAAACTCAGTCTTTAGGTTAAGC
TTCAAGTGTCAGGGCTTAGAGGGCTTTTCACATTTTATGAGAATTTGTACTACTGATTTT
TGTATATTCTTGTTTTTGAGATGAACAGATCTCGGGGAATTGTTGAGTTCCAATGAATGG
CGTTTCACTGTGATCCCTCTCCAGCTCACATCAGTTCTCTAACCTAAGGACGCCTTGTCT
TTGGTTTACTGTCCTGTGAAATGTCAGCTCCATTTCCCCAGAAGTTGTGTGTTTACGACG
AATCAGTGCTTTTCCTCAGTGAGTTGTCAGCCCTCTTAATTTTGGTGAATGTCCTTAATT
CCAAGTCTCTAAACCTGTAGTCCAATCTGTACTCGCGCTGTTACCTGTTAATTGTGTTAC
TGATTATTTTATCTTGCTTGAAGATTGATTCCTACTTTTTAATTTGATAGAAATAAAGTT
TTTTCCTTCTGCTTAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               603-728, gnl|bosTau2|chr17 (4299166-4299289)
               

               
               603-728, gnl|Hg17|chr1 (65409711-65409833)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               603-728, gnl|bosTau2|chr17 (4299166-4299289)
               

               
               603-728, gnl|Hg17|chr1 (65409711-65409833)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fat (0.442282)
               

               
               amn (0.417711)
               

               
               cga (0.279096)
               

               
               csk (0.140746)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.442282)
               

               
               amn (0.417711)
               

               
               cga (0.279096)
               

               
               csk (0.140746)
               

               
               sug (0.127291)

	603-728, gnl\|bosTau2\|chr17 (4299166-4299289)
	603-728, gnl\|Hg17\|chr1 (65409711-65409833)

	fat (0.442282)
	amn (0.417711)
	cga (0.279096)
	csk (0.140746)
	sug (0.127291)