Non-Coding RNA Search

Ss1.1-Pig4-TMW8015K08.3

Sequence:


               
               AACATGAACTTATGCAGTATGACTTGGAAATGGCTGCTCAGGACTTAGCATCCAAGAAGC
AGCAATGTGAGGAACTGGCAACTGGGACCGTGAGAACATTTTCTTTGAAAGGGATGACTA
CCAAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCAGAATAAAGGTGCTAGAAG
AACAAATAAATGAAGGAGAGCAACAGCTTAAGTCTAAAAATCTGGAAGGGAGAGAATTTG
TCAAAAATGCTTGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGTGATTTAAAGG
AAGCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAAAAGGGAATTCAAGTTT
GGACCAATGCTAAGGAATGCTTTAGCAAGATGTAATCCTGTGTAATGAATTTCTCTTCAA
TCAAAGTGCCCCAAAACAGAAGCACAAGTAGATAAAAAAAATTTAAGTTGCTACCCAGCA
TATACAGAAATATATAAGTTGAGTAAATTCAACTTTCTTTAATTTGATTATAGTTAACGT
TAATATAGCACAAAAGGATGTATTTTAATGAAGATTAAGTAGTATAATTTGAGGTTTTGG
GTACTGGTGCTGATTCTAAAGTGTTAATTAGAAAAAACGTACCAACAACTTGTCAGGCTT
ATGAAGCAGTGACTGAATGTCAAGATGTTAGGTAATTTCTAGATGTTTGTTTCAGTGCCA
CTCTTTCAGATCTGCTTATGTAGGGAGTTTTTTTCCTAAAATTGAATTCTTATCTTTATT
CGGTAAAACCCACTAATCTGTTATAGGGGGTTATTTTTTCTTGCCTTATAGTTGAGCTGT
TTGATTTGACAAAGCTCAGCAGAAACTTAGTGTGAAATCTAAAAATTTCTCCCACATTCA
TTAATGCCCCCGTGACATTTGCATACACTAGGAAATGCCTTCAATTTGTGTTTTACCAGA
ATTTTGATACTGGTCAAAAATTTTATACTGCCAATAAAGACTCAACTTCTCAGATATATA
ATGGAATACATTGTTATGATCTAGGAATTGCTATATAGAAAATTTTAATTGATTATGTTA
CATACAAGCATTAAATTCTCTAATAATTCTTAACCTCAGTGATGAGCCTAAATTTACTCT
GCTTGGCTCTCTACACATGGCATTTCAGGGTACAAGATGTAGCATTTCAATGTATAAGAT
ATATGTAGTGAACGTAGGTGGTAGTATCTTCATTATTCACATCCTTCTTTTTTATTGCTT
GGCTGTAATTTTTGTAAAGATAAATTATATTGGTTTTGTGTGTGTGTTTTGTGATATATG
TTCAGAAGCCAAGCACCCTTGGTTTTTTGCTAGCTTTGCAGGACCCTACATGTGTACTCA
TTATTACTAATTATGTAAAAAAATTTTTTCAGTACTGTTCAGCATTCGACTTTTTTACAT
GTTTAAAATGTTGCTGAATTTTTGTGCTGTTTGCCAAACTTATACAATAAATAAAGTATT
GTGTTGATTTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATGAACTTATGCAGTATGACTTGGAAATGGCTGCTCAGGACTTAGCATCCAAGAAGC
AGCAATGTGAGGAACTGGCAACTGGGACCGTGAGAACATTTTCTTTGAAAGGGATGACTA
CCAAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCAGAATAAAGGTGCTAGAAG
AACAAATAAATGAAGGAGAGCAACAGCTTAAGTCTAAAAATCTGGAAGGGAGAGAATTTG
TCAAAAATGCTTGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGTGATTTAAAGG
AAGCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAAAAGGGAATTCAAGTTT
GGACCAATGCTAAGGAATGCTTTAGCAAGATGTAATCCTGTGTAATGAATTTCTCTTCAA
TCAAAGTGCCCCAAAACAGAAGCACAAGTAGATAAAAAAAATTTAAGTTGCTACCCAGCA
TATACAGAAATATATAAGTTGAGTAAATTCAACTTTCTTTAATTTGATTATAGTTAACGT
TAATATAGCACAAAAGGATGTATTTTAATGAAGATTAAGTAGTATAATTTGAGGTTTTGG
GTACTGGTGCTGATTCTAAAGTGTTAATTAGAAAAAACGTACCAACAACTTGTCAGGCTT
ATGAAGCAGTGACTGAATGTCAAGATGTTAGGTAATTTCTAGATGTTTGTTTCAGTGCCA
CTCTTTCAGATCTGCTTATGTAGGGAGTTTTTTTCCTAAAATTGAATTCTTATCTTTATT
CGGTAAAACCCACTAATCTGTTATAGGGGGTTATTTTTTCTTGCCTTATAGTTGAGCTGT
TTGATTTGACAAAGCTCAGCAGAAACTTAGTGTGAAATCTAAAAATTTCTCCCACATTCA
TTAATGCCCCCGTGACATTTGCATACACTAGGAAATGCCTTCAATTTGTGTTTTACCAGA
ATTTTGATACTGGTCAAAAATTTTATACTGCCAATAAAGACTCAACTTCTCAGATATATA
ATGGAATACATTGTTATGATCTAGGAATTGCTATATAGAAAATTTTAATTGATTATGTTA
CATACAAGCATTAAATTCTCTAATAATTCTTAACCTCAGTGATGAGCCTAAATTTACTCT
GCTTGGCTCTCTACACATGGCATTTCAGGGTACAAGATGTAGCATTTCAATGTATAAGAT
ATATGTAGTGAACGTAGGTGGTAGTATCTTCATTATTCACATCCTTCTTTTTTATTGCTT
GGCTGTAATTTTTGTAAAGATAAATTATATTGGTTTTGTGTGTGTGTTTTGTGATATATG
TTCAGAAGCCAAGCACCCTTGGTTTTTTGCTAGCTTTGCAGGACCCTACATGTGTACTCA
TTATTACTAATTATGTAAAAAAATTTTTTCAGTACTGTTCAGCATTCGACTTTTTTACAT
GTTTAAAATGTTGCTGAATTTTTGTGCTGTTTGCCAAACTTATACAATAAATAAAGTATT
GTGTTGATTTTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11493461|gb|AAG35504.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11493461|gb|AAG35504.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               335-453, - strand, RNAz p=0.671592
               

               
               763-880, - strand, RNAz p=0.541709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-453, - strand, RNAz p=0.671592
               

               
               763-880, - strand, RNAz p=0.541709

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1519, gnl|bosTau2|chr5 (27051849-27050337)
               

               
               1-1519, gnl|Hg17|chr3 (126658885-126648183)
               

               
               1-1519, gnl|Mm7|chr17 (20425038-20423555)
               


               
               79-232, gnl|bosTau2|chr1 (37507559-37507712)
               

               
               79-232, gnl|Hg17|chr3 (126655497-126655344)
               

               
               79-232, gnl|Mm7|chr16 (32966257-32966410)
               


               
               334-1513, gnl|bosTau2|chr1 (37510538-37511707)
               

               
               334-1513, gnl|Hg17|chr3 (126649362-126648178)
               

               
               334-1513, gnl|Mm7|chr16 (32972953-32974086)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1519, gnl|bosTau2|chr5 (27051849-27050337)
               

               
               1-1519, gnl|Hg17|chr3 (126658885-126648183)
               

               
               1-1519, gnl|Mm7|chr17 (20425038-20423555)
               


               
               79-232, gnl|bosTau2|chr1 (37507559-37507712)
               

               
               79-232, gnl|Hg17|chr3 (126655497-126655344)
               

               
               79-232, gnl|Mm7|chr16 (32966257-32966410)
               


               
               334-1513, gnl|bosTau2|chr1 (37510538-37511707)
               

               
               334-1513, gnl|Hg17|chr3 (126649362-126648178)
               

               
               334-1513, gnl|Mm7|chr16 (32972953-32974086)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               col (0.390016)
               

               
               rec (0.346141)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               rec (0.346141)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	335-453, - strand, RNAz p=0.671592
	763-880, - strand, RNAz p=0.541709

	1-1519, gnl\|bosTau2\|chr5 (27051849-27050337)
	1-1519, gnl\|Hg17\|chr3 (126658885-126648183)
	1-1519, gnl\|Mm7\|chr17 (20425038-20423555)

	79-232, gnl\|bosTau2\|chr1 (37507559-37507712)
	79-232, gnl\|Hg17\|chr3 (126655497-126655344)
	79-232, gnl\|Mm7\|chr16 (32966257-32966410)

	334-1513, gnl\|bosTau2\|chr1 (37510538-37511707)
	334-1513, gnl\|Hg17\|chr3 (126649362-126648178)
	334-1513, gnl\|Mm7\|chr16 (32972953-32974086)

	col (0.390016)
	rec (0.346141)
	sin (0.174948)
	isp (0.150376)
	fat (0.147427)
	pty (0.142714)
	pla (0.133672)
	ute (0.132784)
	cty (0.10408)