Non-Coding RNA Search

Ss1.1-Pig4-TMW8015K09.3.5

Sequence:


               
               ACCAAGCTGGATGGTTTCCTTTTAGGCAAGAGGGAGGTCAGCAACAGGCTCCCAACAATA
ATGCTGAAGTTAACAATGATGTGCAGAATGCAAACAACCTAGAACTTGAAGAAATGGAGC
GTCTTATGGATGATGGGCTTGAAGATGAGAGTGGAGAAGATGCAGGTGAAGATGGCAGTG
CAATTCAAAGGCCTGGATTAATGGCGTCAGCTTGGTCTTTTATCACCACCTTCTTTACTT
CACTGATACCAGAGGGGCCTCCCCAGGTTGCTAATTAGACCTGAAAAACTGTGCCAGCTG
CAAAGGAGGGTCTGAATTTAGGAAAGTGTTTTAAATAACAGTGCAATTTCAAAAAATTTA
TTACTTTCTTTTCATCATCATGTACAGGGGTATTTTTTTCTTTAAGCTTCTCATGCATAT
GAATATTTTAAGCACAAATGGACTACTAAATGTGTGATTTTTTAAAAAGGTCCTAACAGA
ACATAGCGTAACAGTATTGGTCTTCCAGGTTTTATTAATTTCATTTATGCGTATTAAACC
AAGACAGGCCTGTTTGTGTAGCTTATTTCTTTAAAGAGCTGCTTCACATATAAATGTCTA
TAGCTAATAGCCCAGCCCCTCAATGTATAATTTGAAGAAATATATCTATTTTCTGTGAAT
TATCCTGAAAGTTTTAAACTGAATGACCTCATAGTTTTTAACAAAGAATATTATTTACCT
GAAATGTGCTAGTAGCATCTTTCCCAGCCATAAAGCAATAAACTTCTCAGTAATCTTAAT
TTTGAAATTTGAATAAATGGAAACTTTCTATTTTAAGGGCATGCACCCCATCAATTGGAA
TTAGTACTTTAAAAAAAATGGCAGCTCTTCAATGGAATTAACAGTGATATAAAATGTTTG
ATATGGGCAGTACTTTTATAAAATAAGATATGCTGGAAATCGCTCCCTGTAATTTTTTAA
AATAAAAGGTCAATTATGGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAGCTGGATGGTTTCCTTTTAGGCAAGAGGGAGGTCAGCAACAGGCTCCCAACAATA
ATGCTGAAGTTAACAATGATGTGCAGAATGCAAACAACCTAGAACTTGAAGAAATGGAGC
GTCTTATGGATGATGGGCTTGAAGATGAGAGTGGAGAAGATGCAGGTGAAGATGGCAGTG
CAATTCAAAGGCCTGGATTAATGGCGTCAGCTTGGTCTTTTATCACCACCTTCTTTACTT
CACTGATACCAGAGGGGCCTCCCCAGGTTGCTAATTAGACCTGAAAAACTGTGCCAGCTG
CAAAGGAGGGTCTGAATTTAGGAAAGTGTTTTAAATAACAGTGCAATTTCAAAAAATTTA
TTACTTTCTTTTCATCATCATGTACAGGGGTATTTTTTTCTTTAAGCTTCTCATGCATAT
GAATATTTTAAGCACAAATGGACTACTAAATGTGTGATTTTTTAAAAAGGTCCTAACAGA
ACATAGCGTAACAGTATTGGTCTTCCAGGTTTTATTAATTTCATTTATGCGTATTAAACC
AAGACAGGCCTGTTTGTGTAGCTTATTTCTTTAAAGAGCTGCTTCACATATAAATGTCTA
TAGCTAATAGCCCAGCCCCTCAATGTATAATTTGAAGAAATATATCTATTTTCTGTGAAT
TATCCTGAAAGTTTTAAACTGAATGACCTCATAGTTTTTAACAAAGAATATTATTTACCT
GAAATGTGCTAGTAGCATCTTTCCCAGCCATAAAGCAATAAACTTCTCAGTAATCTTAAT
TTTGAAATTTGAATAAATGGAAACTTTCTATTTTAAGGGCATGCACCCCATCAATTGGAA
TTAGTACTTTAAAAAAAATGGCAGCTCTTCAATGGAATTAACAGTGATATAAAATGTTTG
ATATGGGCAGTACTTTTATAAAATAAGATATGCTGGAAATCGCTCCCTGTAATTTTTTAA
AATAAAAGGTCAATTATGGTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9CSZ4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSZ4_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               113-984, gnl|bosTau2|chr4 (33637308-33636439)
               

               
               113-984, gnl|Hg17|chr7 (35446705-35445509)
               

               
               113-984, gnl|Mm7|chr9 (24992959-24992078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-984, gnl|bosTau2|chr4 (33637308-33636439)
               

               
               113-984, gnl|Hg17|chr7 (35446705-35445509)
               

               
               113-984, gnl|Mm7|chr9 (24992959-24992078)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               tes (0.415628)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	113-984, gnl\|bosTau2\|chr4 (33637308-33636439)
	113-984, gnl\|Hg17\|chr7 (35446705-35445509)
	113-984, gnl\|Mm7\|chr9 (24992959-24992078)

	tes (0.415628)
	vin (0.332557)
	fco (0.314416)
	tbr (0.308356)
	cte (0.29274)
	ste (0.270416)
	tra (0.246184)
	fbs (0.175346)
	sin (0.174948)
	lun (0.150489)
	liv (0.146284)
	lin (0.145603)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	jca (0.11396)
	spc (0.113366)