Non-Coding RNA Search

Ss1.1-Pig4-TMW8015L12.3

Sequence:


               
               GCAGATGTTGGAAAAGTATTTTGTGAAAAGCTGTATTTATTATAAATACTAGGGCTATGA
CATAGTGCTGTTGGAATTAAGTCATTTTCCCTATCTATTTATAATTTAAAGAAATGTTAG
CTTCCCTGTTGTATGTCAGGTTTAAAGCAGGGCACATTGTTGCAGCAAAATGTGTATTTG
AAAAATTGTATTTGCAATTTTGGGTCATGAGAGTTTGCAGTATACTAAATGCACAAGTGA
TGGTCACTTTGTGCCTCAGTATTTACTTTGTTTCAGTAAAGTTACTTTATTATTGTTTAA
GATTTCAGATTAAAATAGTTACCAAGCAAAGTTTACTTGTAACAATTGGCTTTTTAAAAA
TAACCTGTTGATACATCATTGTCAGTCCAAATGAATATGTGAAACAGCTGGCATTGTACC
AATTTTGATTTTGCTTAAAACTCAGTTTTCCTTTTTTTTTTTTTTTAATTGTATATGTGT
TGGGTTTGCAGCATGAACTTGCACAGTTAATGCACGTTTTCTGGTTAAGTAAACATGATG
CACACTGTTCTGTAACAGAAAACCCTATTGTGCCTTACCTATGTGCTTTTGTGGGCACCA
TGTTTATGAAGAATAAAAAATGATTTGTTATCTGAAGAGAATAAATTTTAAATTCTCAGT
TTATGTCTCAGATGCTAAAGTGTGAAATATAAATATATATAATATATAAAATAACCAATC
TTTCTGTATTTTATGTGCATCACAGTGCTTTATCTGAGCTTAGTGATCCCATCTTGTGAC
CTGTTGCAAGAGTGAATGTAAAAACTAGCTGTGGCATTTTAAAAGGTCGCCTTTTTGATG
CAGATGCATCTTTTTCTTGCTTCTAAGACATGTTCCATGTAAACATTGTACATTTATTAT
TGTAATATATACTATTATGCAGCTTATTTTACCTGAAACTGTTAAGTTGACCAAGATCCC
TCCCTGCAAGACAGATGGGAATGTGTATATTAACTAGATATTTGAGAAGTTCTGAAGTTT
GATGTACTCTGTTACTTGTCCTGTTTAAAAAAGGAAAAGATTCTAATTAAAAATTTATTA
GGTTTTTTTTTAATGTGTCTTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGATGTTGGAAAAGTATTTTGTGAAAAGCTGTATTTATTATAAATACTAGGGCTATGA
CATAGTGCTGTTGGAATTAAGTCATTTTCCCTATCTATTTATAATTTAAAGAAATGTTAG
CTTCCCTGTTGTATGTCAGGTTTAAAGCAGGGCACATTGTTGCAGCAAAATGTGTATTTG
AAAAATTGTATTTGCAATTTTGGGTCATGAGAGTTTGCAGTATACTAAATGCACAAGTGA
TGGTCACTTTGTGCCTCAGTATTTACTTTGTTTCAGTAAAGTTACTTTATTATTGTTTAA
GATTTCAGATTAAAATAGTTACCAAGCAAAGTTTACTTGTAACAATTGGCTTTTTAAAAA
TAACCTGTTGATACATCATTGTCAGTCCAAATGAATATGTGAAACAGCTGGCATTGTACC
AATTTTGATTTTGCTTAAAACTCAGTTTTCCTTTTTTTTTTTTTTTAATTGTATATGTGT
TGGGTTTGCAGCATGAACTTGCACAGTTAATGCACGTTTTCTGGTTAAGTAAACATGATG
CACACTGTTCTGTAACAGAAAACCCTATTGTGCCTTACCTATGTGCTTTTGTGGGCACCA
TGTTTATGAAGAATAAAAAATGATTTGTTATCTGAAGAGAATAAATTTTAAATTCTCAGT
TTATGTCTCAGATGCTAAAGTGTGAAATATAAATATATATAATATATAAAATAACCAATC
TTTCTGTATTTTATGTGCATCACAGTGCTTTATCTGAGCTTAGTGATCCCATCTTGTGAC
CTGTTGCAAGAGTGAATGTAAAAACTAGCTGTGGCATTTTAAAAGGTCGCCTTTTTGATG
CAGATGCATCTTTTTCTTGCTTCTAAGACATGTTCCATGTAAACATTGTACATTTATTAT
TGTAATATATACTATTATGCAGCTTATTTTACCTGAAACTGTTAAGTTGACCAAGATCCC
TCCCTGCAAGACAGATGGGAATGTGTATATTAACTAGATATTTGAGAAGTTCTGAAGTTT
GATGTACTCTGTTACTTGTCCTGTTTAAAAAAGGAAAAGATTCTAATTAAAAATTTATTA
GGTTTTTTTTTAATGTGTCTTGGC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.858799
               

               
               472-591, + strand, RNAz p=0.741906
               

               
               749-864, - strand, RNAz p=0.874065

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.858799
               

               
               472-591, + strand, RNAz p=0.741906
               

               
               749-864, - strand, RNAz p=0.874065

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               498-638, - strand, RNAmicro p=0.991506

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               498-638, - strand, RNAmicro p=0.991506

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014319, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014319, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr5 (30386596-30387698)
               

               
               1-1104, gnl|Hg17|chr12 (63927294-63928390)
               

               
               1-1104, gnl|Mm7|chr10 (120320694-120319628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr5 (30386596-30387698)
               

               
               1-1104, gnl|Hg17|chr12 (63927294-63928390)
               

               
               1-1104, gnl|Mm7|chr10 (120320694-120319628)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-159, - strand, RNAz p=0.858799
	472-591, + strand, RNAz p=0.741906
	749-864, - strand, RNAz p=0.874065

	1-1104, gnl\|bosTau2\|chr5 (30386596-30387698)
	1-1104, gnl\|Hg17\|chr12 (63927294-63928390)
	1-1104, gnl\|Mm7\|chr10 (120320694-120319628)

	pro (0.512033)
	liv (0.292569)
	kid (0.259471)
	tes (0.207814)
	rec (0.17307)
	fco (0.157208)
	bfe (0.149858)
	tra (0.123092)
	eje (0.0988338)