Non-Coding RNA Search

Ss1.1-Pig4-TMW8015M05.5

Sequence:


               
               ACCATGTCCCTTTGGTTAGAGGTAATGATTCGTTTTTTTACCCCTGGTTGTAAGTCTCTA
AAAGGCCCTGATGACTGACTGAGCTTATTAATTCCTCATGCTGTTTCAAAAGGTATCAAA
ACTGAAAACCTTTTTAAGGGGGAAGACTTTTAAAGTCAATTCATAAGACAACATTTAGTA
AAGGATGTGGGAAAGATTACCAGTATCTTCAGATGTTAATGGATTTTTTCTGCCAACAAA
AGCCACATTCAAATTGTAGTTGGTGAAAGTTTGTGTTTTTTTTCCAGTATTATTTAGAAG
AGGCCATTTGAATCTATAGTACTGTTTGACTTATCAGCTTCATTATGCTCAATTCTTATT
TTGAGCTTTAAATAGAGTCCTCTAAAGGGGTAGTAGTGTAATTCTGGTGGCAAAATCAAA
ACTTTAACTTGTCATAAAACCCTAATACAGAATGAACCTATTTCTCATTGATTGGGGTTT
AGATTGAATGATTCTTCTACTTGAGGAACATAAATTGCCATTGCTCAGAGACGTTTAGGT
TCCTATCTACCTTAAGATGACTCTCTTGGCAACTAGGGGATTTAAAAAGGAAAAAAAAAA
AAAAAAAGATGCTTGTGTGTTGTTAGTACACAATTAGAGAATACGGTTTCTAATGGTTGG
ACTTTGAGGGACCCTCCCTAAAGAATGAGTTATGTATCTCCTCAAGGAAATCATGGAAAA
TTCTGTTTATTCTTCAGTGAGTCCTTTTGAATTAATGTTCTTACATTTTTTCTAAGTCTG
TGTAAGTGCTTATGTATAAGTATATAATTGTATAAATATTTATAAATATATTTATATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATGTCCCTTTGGTTAGAGGTAATGATTCGTTTTTTTACCCCTGGTTGTAAGTCTCTA
AAAGGCCCTGATGACTGACTGAGCTTATTAATTCCTCATGCTGTTTCAAAAGGTATCAAA
ACTGAAAACCTTTTTAAGGGGGAAGACTTTTAAAGTCAATTCATAAGACAACATTTAGTA
AAGGATGTGGGAAAGATTACCAGTATCTTCAGATGTTAATGGATTTTTTCTGCCAACAAA
AGCCACATTCAAATTGTAGTTGGTGAAAGTTTGTGTTTTTTTTCCAGTATTATTTAGAAG
AGGCCATTTGAATCTATAGTACTGTTTGACTTATCAGCTTCATTATGCTCAATTCTTATT
TTGAGCTTTAAATAGAGTCCTCTAAAGGGGTAGTAGTGTAATTCTGGTGGCAAAATCAAA
ACTTTAACTTGTCATAAAACCCTAATACAGAATGAACCTATTTCTCATTGATTGGGGTTT
AGATTGAATGATTCTTCTACTTGAGGAACATAAATTGCCATTGCTCAGAGACGTTTAGGT
TCCTATCTACCTTAAGATGACTCTCTTGGCAACTAGGGGATTTAAAAAGGAAAAAAAAAA
AAAAAAAGATGCTTGTGTGTTGTTAGTACACAATTAGAGAATACGGTTTCTAATGGTTGG
ACTTTGAGGGACCCTCCCTAAAGAATGAGTTATGTATCTCCTCAAGGAAATCATGGAAAA
TTCTGTTTATTCTTCAGTGAGTCCTTTTGAATTAATGTTCTTACATTTTTTCTAAGTCTG
TGTAAGTGCTTATGTATAAGTATATAATTGTATAAATATTTATAAATATATTTATATAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               649-768, + strand, RNAz p=0.809457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               649-768, + strand, RNAz p=0.809457

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK129880, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK129880, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr1 (42337803-42336987)
               

               
               1-840, gnl|Hg17|chr3 (197570848-197570019)
               

               
               1-840, gnl|Mm7|chr16 (32060467-32061267)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr1 (42337803-42336987)
               

               
               1-840, gnl|Hg17|chr3 (197570848-197570019)
               

               
               1-840, gnl|Mm7|chr16 (32060467-32061267)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               gul (0.355177)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	1-840, gnl\|bosTau2\|chr1 (42337803-42336987)
	1-840, gnl\|Hg17\|chr3 (197570848-197570019)
	1-840, gnl\|Mm7\|chr16 (32060467-32061267)