Ss1.1-Pig4-TMW8015M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGGTGCGAGCCGGGCTGTAGCGTTCCGGCCAGGCCATGGCAGCGTCACCCCTGAAAG TGTGCATCGTGGGCTCCGGGAACTGGGGTTCAGCTGTTGCAAAAATAATTGGTGATAATG TCAAGAAACTACAGAAGTTTGCCTCTACGGTCAAGATGTGGGTCTTTGAAGAAACGGTTA ATGGGAGAAAACTGACAGACATCATCAATAACGACCATGAAAATGTGAAATATCTCCCTG GACATAAGCTGCCAGAAAATGTGGTTGCCGTCGCTAACCTTGGCGAGGCGGTGAAGGACG CAGACCTGCTGGTGTTTGTCATCCCCCACCAGTTCATACACCGCATCTGTGACGAGATCA CGGGGAGGGTGCCCAAGGATGCGCTGGGCATCACCCTCATCAAGGGCATAGACGAGGGTC CCGAGGGGCTGAAGCTCATTTCCGACATCATCCGAGAGAAGATGGGTATTGACATCAGCG TGTTGATGGGAGCCAACATTGCCAATGAGGTGGCCGCCGGCAAGTTCTGTGAGACCACCA TCGGCAGCAAGGTCATGGAGAATGGCCTTCTCTTCAAAGAACTTCTGCAGACTCCGAATT TTCGAATTACGGTGGTGGATGATGCAGACACCGTTGAACTTTGTGGTGCTCTGAAGAACA TCGTGGCCGTGGGAGCTGGGTTCTGTGATGGCCTCCGCTGTGGCGACAACACCAAAGCTG CCGTCATCCGTCTGGGGCTCATGGAAATGATTGCCTTTGCCAGGATCTTCTGCAAGGGCC AGGTGTCTACGGCCACCTTCCTGGAGAGCTGTGGCGTGGCCGACCTGATCACCACCTGCT ATGGGGGCCGGAACCGCAGGGTTGCTGAGGCCTTTGCCAGGACCGGAAAGACCATCGAGG AACTGGAGAAGGAAATGCTGAATGGGCAGAAGCTGCAAGGCCCTCAGACGGCCGCTGAGG TGTACCGCATCCTCAAGCAAAAGGGCCTGGTGGACAAGTTTCCATTGTTTACTGCCGTCT ACCAGATCTGCTATGAAGGCAGGCCCGTCCAAGAGATGTTGTCTTGTCTCCAGAGCCATC CAGAGCATATATAAAGTGAATCACACAGCAGGTCAGGGAGAGGCCCGCCTCTCTGATCAG TCATTGGCATTCAGATGGAAACCAGGACTTGGCAACAATATCTTGGCTTGACTGTAATCC CATCCTGGATAGGTATGAATTTTTACAGGTTCATTTTTGAATTGTGAGGTGAAGTTCACT GGCTAAGATATTACTGAGCAACCACCAGATACACATACGGGACCGTGTGAGTGCGTATTC CTTTCTCCTTCTGTGGATGTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGGTGCGAGCCGGGCTGTAGCGTTCCGGCCAGGCCATGGCAGCGTCACCCCTGAAAG TGTGCATCGTGGGCTCCGGGAACTGGGGTTCAGCTGTTGCAAAAATAATTGGTGATAATG TCAAGAAACTACAGAAGTTTGCCTCTACGGTCAAGATGTGGGTCTTTGAAGAAACGGTTA ATGGGAGAAAACTGACAGACATCATCAATAACGACCATGAAAATGTGAAATATCTCCCTG GACATAAGCTGCCAGAAAATGTGGTTGCCGTCGCTAACCTTGGCGAGGCGGTGAAGGACG CAGACCTGCTGGTGTTTGTCATCCCCCACCAGTTCATACACCGCATCTGTGACGAGATCA CGGGGAGGGTGCCCAAGGATGCGCTGGGCATCACCCTCATCAAGGGCATAGACGAGGGTC CCGAGGGGCTGAAGCTCATTTCCGACATCATCCGAGAGAAGATGGGTATTGACATCAGCG TGTTGATGGGAGCCAACATTGCCAATGAGGTGGCCGCCGGCAAGTTCTGTGAGACCACCA TCGGCAGCAAGGTCATGGAGAATGGCCTTCTCTTCAAAGAACTTCTGCAGACTCCGAATT TTCGAATTACGGTGGTGGATGATGCAGACACCGTTGAACTTTGTGGTGCTCTGAAGAACA TCGTGGCCGTGGGAGCTGGGTTCTGTGATGGCCTCCGCTGTGGCGACAACACCAAAGCTG CCGTCATCCGTCTGGGGCTCATGGAAATGATTGCCTTTGCCAGGATCTTCTGCAAGGGCC AGGTGTCTACGGCCACCTTCCTGGAGAGCTGTGGCGTGGCCGACCTGATCACCACCTGCT ATGGGGGCCGGAACCGCAGGGTTGCTGAGGCCTTTGCCAGGACCGGAAAGACCATCGAGG AACTGGAGAAGGAAATGCTGAATGGGCAGAAGCTGCAAGGCCCTCAGACGGCCGCTGAGG TGTACCGCATCCTCAAGCAAAAGGGCCTGGTGGACAAGTTTCCATTGTTTACTGCCGTCT ACCAGATCTGCTATGAAGGCAGGCCCGTCCAAGAGATGTTGTCTTGTCTCCAGAGCCATC CAGAGCATATATAAAGTGAATCACACAGCAGGTCAGGGAGAGGCCCGCCTCTCTGATCAG TCATTGGCATTCAGATGGAAACCAGGACTTGGCAACAATATCTTGGCTTGACTGTAATCC CATCCTGGATAGGTATGAATTTTTACAGGTTCATTTTTGAATTGTGAGGTGAAGTTCACT GGCTAAGATATTACTGAGCAACCACCAGATACACATACGGGACCGTGTGAGTGCGTATTC CTTTCTCCTTCTGTGGATGTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 868-986, - strand, RNAz p=0.669268 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 868-986, - strand, RNAz p=0.669268 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 540-656, gnl|bosTau2|chr22 (10635943-10636059) | |
| 540-656, gnl|canFam2|chr23 (15631238-15631108) | |
| 540-656, gnl|danRer3|chr16 (41679476-41679607) | |
| 540-656, gnl|dasNov1|scaffold_22937 (10452-10582) | |
| 540-656, gnl|echTel1|scaffold_259949 (7011-7141) | |
| 540-656, gnl|fr1|chrUn (115320394-115320274) | |
| 540-656, gnl|galGal2|chr2 (39444537-39444667) | |
| 540-656, gnl|hg17|chr3 (32163112-32163242) | |
| 540-656, gnl|Hg17|chr3 (32163114-32163230) | |
| 540-656, gnl|loxAfr1|scaffold_44536 (17989-18119) | |
| 540-656, gnl|mm7|chr9 (114562092-114561963) | |
| 540-656, gnl|Mm7|chr9 (114562088-114561972) | |
| 540-656, gnl|oryCun1|scaffold_179589 (384-514) | |
| 540-656, gnl|panTro1|chr2 (33152625-33152755) | |
| 540-656, gnl|rheMac2|chr2 (174622106-174622236) | |
| 540-656, gnl|rn3|chr8 (119348138-119348009) | |
| 540-656, gnl|tetNig1|chr9 (7627688-7627592) | |
| 540-656, gnl|xenTro1|scaffold_1152 (216058-216182) | |
| 868-996, gnl|bosTau2|chr13 (9790843-9790970) | |
| 868-996, gnl|canFam2|chr2 (5925606-5924658) | |
| 868-996, gnl|dasNov1|scaffold_4345 (21450-20492) | |
| 868-996, gnl|echTel1|scaffold_310614 (149886-148910) | |
| 868-996, gnl|hg17|chr10 (34263952-34264924) | |
| 868-996, gnl|loxAfr1|scaffold_11517 (43040-42063) | |
| 868-996, gnl|mm7|chr8 (126387556-126386592) | |
| 868-996, gnl|Mm7|chrX (116352674-116352549) | |
| 868-996, gnl|monDom2|scaffold_7 (34444375-34443345) | |
| 868-996, gnl|oryCun1|scaffold_26319 (1210-2075) | |
| 868-996, gnl|panTro1|chr8 (34684105-34685078) | |
| 868-996, gnl|rheMac2|chr9 (34124949-34125922) | |
| 868-996, gnl|rn3|chr19 (57774362-57773402) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 540-656, gnl|bosTau2|chr22 (10635943-10636059) | |
| 540-656, gnl|canFam2|chr23 (15631238-15631108) | |
| 540-656, gnl|danRer3|chr16 (41679476-41679607) | |
| 540-656, gnl|dasNov1|scaffold_22937 (10452-10582) | |
| 540-656, gnl|echTel1|scaffold_259949 (7011-7141) | |
| 540-656, gnl|fr1|chrUn (115320394-115320274) | |
| 540-656, gnl|galGal2|chr2 (39444537-39444667) | |
| 540-656, gnl|hg17|chr3 (32163112-32163242) | |
| 540-656, gnl|Hg17|chr3 (32163114-32163230) | |
| 540-656, gnl|loxAfr1|scaffold_44536 (17989-18119) | |
| 540-656, gnl|mm7|chr9 (114562092-114561963) | |
| 540-656, gnl|Mm7|chr9 (114562088-114561972) | |
| 540-656, gnl|oryCun1|scaffold_179589 (384-514) | |
| 540-656, gnl|panTro1|chr2 (33152625-33152755) | |
| 540-656, gnl|rheMac2|chr2 (174622106-174622236) | |
| 540-656, gnl|rn3|chr8 (119348138-119348009) | |
| 540-656, gnl|tetNig1|chr9 (7627688-7627592) | |
| 540-656, gnl|xenTro1|scaffold_1152 (216058-216182) | |
| 868-996, gnl|bosTau2|chr13 (9790843-9790970) | |
| 868-996, gnl|canFam2|chr2 (5925606-5924658) | |
| 868-996, gnl|dasNov1|scaffold_4345 (21450-20492) | |
| 868-996, gnl|echTel1|scaffold_310614 (149886-148910) | |
| 868-996, gnl|hg17|chr10 (34263952-34264924) | |
| 868-996, gnl|loxAfr1|scaffold_11517 (43040-42063) | |
| 868-996, gnl|mm7|chr8 (126387556-126386592) | |
| 868-996, gnl|Mm7|chrX (116352674-116352549) | |
| 868-996, gnl|monDom2|scaffold_7 (34444375-34443345) | |
| 868-996, gnl|oryCun1|scaffold_26319 (1210-2075) | |
| 868-996, gnl|panTro1|chr8 (34684105-34685078) | |
| 868-996, gnl|rheMac2|chr9 (34124949-34125922) | |
| 868-996, gnl|rn3|chr19 (57774362-57773402) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pro (0.512033) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hlv (0.139256) | |
| jej (0.0989218) |