Non-Coding RNA Search

Ss1.1-Pig4-TMW8015P04.5

Sequence:


               
               CAGAAAAGTTTATAGTGAAGGGAATGGTGGAACGCTTCAACGATGACTTCATTGAGACAC
GCAGAAAGGCGTTGCATAAATTTTTGAACCGAATTGCTGATCATCCAACTCTAACATTTA
ATGAAGACTTCAAAGTTTTTCTTACGGCACAAGCTTGGGAGCTCTCTTCTCACAAGAAGC
AAGGGCCTGGATTACTTAGCAGGATGGGGCAGACCGTCAGATCGGTGGCATTGTCAATGA
GAGGAGTTAAAAGCCGCCCCGAGGAGTTCATGGAAATGAATAACTTTATTGAAATATTTA
GCCATAAAATAAACTTGATAGATAAAATATCTCAGAGAATCTACAAGGAAGAAAGGGACT
ATTTTGACGAAATGAAAGAATATGGCCCAATTCATATTCTGTGGTCCGCCTCAGAAGAAG
AACTGGTCGATCCTCTAAAAGGTGTGGCCAGCTGCCTTGACAAGTGCTGTAAGGCCACCG
AAAAACGGATGGCTGGACTCTCGGAGGCCCTACTTCCTGTCGTCCATGAATATGTGCTTT
ACAGTGAAATGTTAATGGGTGTTATGAAAAGAAGAGACCAAATACAAGCGGAACTGGATT
CCAAAGTTGAAGCTTTGACCTCTAAAAAGGCAGATACCGATCTGCTTACGGAAGAGATTG
GAAAACTGGAAGATAAAGTGGAGTGTGCCAACAATGCCCTGAAAGCAGACTGGGAAAGAT
GGAGACAAAACATGCAGAATGATATCAAGTCAGCGTTTACAGATATGGCCGAGGAGAACA
TTTGCTATTATGAACAGTGCCTTGCCACATGGGAGTCCTTCCTTACATCGCAGACAGATC
TCCACTTGGAAGAAGCTTCCGAAGATAAATTTTAATTGCATTGAAGATTTCTTTGTGAAC
TTTGGGAGATAGCATCTGTTAACCAAAGTTATTATCTCTGGATGGGCTGTATCCTTTATA
AAGTGGACGAAAATTGTTTCACACTGTCTGGAAAACCAACACCTTGAAACTTGTATTCCA
GATCATTGATAGGAAGTTGGAGATATATATACATACATATATATATATATATACACACAC
ATATATATATATAAATATTTAGCTTAGAGTTTTAACTATGTTCTTAAATTTATGCAGATA
ACTATACAAAGTGTTTTTTTCTTAAATATTTGTCTGTGAACATGTCATTAAATATATGAC
TCAGTTTTAATATAAAAAATTTAATGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAAAGTTTATAGTGAAGGGAATGGTGGAACGCTTCAACGATGACTTCATTGAGACAC
GCAGAAAGGCGTTGCATAAATTTTTGAACCGAATTGCTGATCATCCAACTCTAACATTTA
ATGAAGACTTCAAAGTTTTTCTTACGGCACAAGCTTGGGAGCTCTCTTCTCACAAGAAGC
AAGGGCCTGGATTACTTAGCAGGATGGGGCAGACCGTCAGATCGGTGGCATTGTCAATGA
GAGGAGTTAAAAGCCGCCCCGAGGAGTTCATGGAAATGAATAACTTTATTGAAATATTTA
GCCATAAAATAAACTTGATAGATAAAATATCTCAGAGAATCTACAAGGAAGAAAGGGACT
ATTTTGACGAAATGAAAGAATATGGCCCAATTCATATTCTGTGGTCCGCCTCAGAAGAAG
AACTGGTCGATCCTCTAAAAGGTGTGGCCAGCTGCCTTGACAAGTGCTGTAAGGCCACCG
AAAAACGGATGGCTGGACTCTCGGAGGCCCTACTTCCTGTCGTCCATGAATATGTGCTTT
ACAGTGAAATGTTAATGGGTGTTATGAAAAGAAGAGACCAAATACAAGCGGAACTGGATT
CCAAAGTTGAAGCTTTGACCTCTAAAAAGGCAGATACCGATCTGCTTACGGAAGAGATTG
GAAAACTGGAAGATAAAGTGGAGTGTGCCAACAATGCCCTGAAAGCAGACTGGGAAAGAT
GGAGACAAAACATGCAGAATGATATCAAGTCAGCGTTTACAGATATGGCCGAGGAGAACA
TTTGCTATTATGAACAGTGCCTTGCCACATGGGAGTCCTTCCTTACATCGCAGACAGATC
TCCACTTGGAAGAAGCTTCCGAAGATAAATTTTAATTGCATTGAAGATTTCTTTGTGAAC
TTTGGGAGATAGCATCTGTTAACCAAAGTTATTATCTCTGGATGGGCTGTATCCTTTATA
AAGTGGACGAAAATTGTTTCACACTGTCTGGAAAACCAACACCTTGAAACTTGTATTCCA
GATCATTGATAGGAAGTTGGAGATATATATACATACATATATATATATATATACACACAC
ATATATATATATAAATATTTAGCTTAGAGTTTTAACTATGTTCTTAAATTTATGCAGATA
ACTATACAAAGTGTTTTTTTCTTAAATATTTGTCTGTGAACATGTCATTAAATATATGAC
TCAGTTTTAATATAAAAAATTTAATGAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55666322|emb|CAH72125.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55666322|emb|CAH72125.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               457-576, - strand, RNAz p=0.507677
               

               
               814-933, - strand, RNAz p=0.587425
               

               
               974-1089, - strand, RNAz p=0.996642

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-576, - strand, RNAz p=0.507677
               

               
               814-933, - strand, RNAz p=0.587425
               

               
               974-1089, - strand, RNAz p=0.996642

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1198, gnl|bosTau2|chr11 (71874348-71873156)
               

               
               1-1198, gnl|Hg17|chr11 (107114253-107111940)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1198, gnl|bosTau2|chr11 (71874348-71873156)
               

               
               1-1198, gnl|Hg17|chr11 (107114253-107111940)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbe (0.478469)
               

               
               ski (0.440205)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               ski (0.440205)
               

               
               cje (0.330469)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	457-576, - strand, RNAz p=0.507677
	814-933, - strand, RNAz p=0.587425
	974-1089, - strand, RNAz p=0.996642

	1-1198, gnl\|bosTau2\|chr11 (71874348-71873156)
	1-1198, gnl\|Hg17\|chr11 (107114253-107111940)

	cbe (0.478469)
	ski (0.440205)
	cje (0.330469)
	mga (0.32041)
	csk (0.281492)
	ova (0.258264)
	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	cut (0.169924)
	lin (0.145603)
	pty (0.142714)
	nca (0.136874)
	nmm (0.132802)
	kid (0.129735)
	tra (0.123092)
	spc (0.113366)
	ldo (0.0970026)