Non-Coding RNA Search

Ss1.1-Pig4-TMW8016A03.3

Sequence:


               
               GTCTAGGTGACCAATGGATCGTTCATACAAACAAACAAACAAAAAAAGAAAAATCTTATT
CAGAAGTGACCTTAGTATTACTTCACTATTCTGAACACACTGAAGACACTCACTTCATGT
GGACTTTGAGCTACAGACCTTTTACATTCATCCCAGACAGACTGGACGGGTAGCAATTGC
TATGCACAGCCTAATGGGCACTGCAGGTTTTTAGAGCCATTTCGAGTTTGTGTTGTTAAG
GAGGTATTGAGTAAATGATGAAGGAGGTATGCCTGACCAGAGTGGGACTCTCAGTCATAG
ATCCACCTGCAAGTTTCCTGTTTCCTTTTTGTGTTTTGTTGCTTTTGAACATAAAACCAA
CCATACATATGCCAGTACCAAGTGGATTAACTGGCTTAGAACATTCAACATATTGACTCC
ACCACCTGACGTTCACAGTGTCTTGTTTCTTAGCAACAGATACGAAGTGATAAATCAGAA
TTAGTCAGAGGCTACAGATTTTACAGGGTATTTGTTCCATAGCACAAAGTATTTCCCCAC
TCTTGCATCACAGCACAAACTACCAAATTTTAATTATTGGATTCCAGCAATAATTTGTAT
TGGTTTTCAAACCGGCGGAATTTTGATAGTGTTAGTTCGAGTTTGACGCTTTTGAGTTAG
ATCTCTAAATGGTGACAGTTTACAAGGTTTTATCTAGCTTTCTTATTTATACTTGACTGA
ATTGTAATGATGATTTTTTTTTTTTCTAATCGTAATCTGACCTAATAGCCATACAAAAAG
TGACCCTTAGTACTGACTAGGCGTAGATTTTCATGGTTGTAGATATTACTTCAGTTTCGG
TGCTGGAAAATATGTACAACATACTAACAGAATTGAAAGAAAATATAGAGACTTGGGGTT
TTTTTCCAAAGCAGGTAAAGAGGGCCTCAGGGCGTTGGAATGGTGTCCTCAAAAATGCAT
ATCCACTGTGGACATGGGGGAAGAAGGAATTAGTAAGGGAGTTTAATCAGAGGTTCAAAG
CTTAGCCCCCTTGACATAGAAATAAACCAGGTGAGCAGCCCCAGATTTTAGCAGAATATT
TTTACTATGATGCTGTTTTATTAACATTTTCTAAATTTCAATACACAAAGTGAATGTTTG
AACATTGCTGGGTCCCAGTGTTGGTGGCTGTTGGAGTTTCTGGACCACTTGCTAGCAGTG
ATTTAAAAATGGTAATTAGCTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTAGGTGACCAATGGATCGTTCATACAAACAAACAAACAAAAAAAGAAAAATCTTATT
CAGAAGTGACCTTAGTATTACTTCACTATTCTGAACACACTGAAGACACTCACTTCATGT
GGACTTTGAGCTACAGACCTTTTACATTCATCCCAGACAGACTGGACGGGTAGCAATTGC
TATGCACAGCCTAATGGGCACTGCAGGTTTTTAGAGCCATTTCGAGTTTGTGTTGTTAAG
GAGGTATTGAGTAAATGATGAAGGAGGTATGCCTGACCAGAGTGGGACTCTCAGTCATAG
ATCCACCTGCAAGTTTCCTGTTTCCTTTTTGTGTTTTGTTGCTTTTGAACATAAAACCAA
CCATACATATGCCAGTACCAAGTGGATTAACTGGCTTAGAACATTCAACATATTGACTCC
ACCACCTGACGTTCACAGTGTCTTGTTTCTTAGCAACAGATACGAAGTGATAAATCAGAA
TTAGTCAGAGGCTACAGATTTTACAGGGTATTTGTTCCATAGCACAAAGTATTTCCCCAC
TCTTGCATCACAGCACAAACTACCAAATTTTAATTATTGGATTCCAGCAATAATTTGTAT
TGGTTTTCAAACCGGCGGAATTTTGATAGTGTTAGTTCGAGTTTGACGCTTTTGAGTTAG
ATCTCTAAATGGTGACAGTTTACAAGGTTTTATCTAGCTTTCTTATTTATACTTGACTGA
ATTGTAATGATGATTTTTTTTTTTTCTAATCGTAATCTGACCTAATAGCCATACAAAAAG
TGACCCTTAGTACTGACTAGGCGTAGATTTTCATGGTTGTAGATATTACTTCAGTTTCGG
TGCTGGAAAATATGTACAACATACTAACAGAATTGAAAGAAAATATAGAGACTTGGGGTT
TTTTTCCAAAGCAGGTAAAGAGGGCCTCAGGGCGTTGGAATGGTGTCCTCAAAAATGCAT
ATCCACTGTGGACATGGGGGAAGAAGGAATTAGTAAGGGAGTTTAATCAGAGGTTCAAAG
CTTAGCCCCCTTGACATAGAAATAAACCAGGTGAGCAGCCCCAGATTTTAGCAGAATATT
TTTACTATGATGCTGTTTTATTAACATTTTCTAAATTTCAATACACAAAGTGAATGTTTG
AACATTGCTGGGTCCCAGTGTTGGTGGCTGTTGGAGTTTCTGGACCACTTGCTAGCAGTG
ATTTAAAAATGGTAATTAGCTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               278-396, - strand, RNAz p=0.778965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-396, - strand, RNAz p=0.778965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1224, gnl|bosTau2|chr1 (29245601-29246817)
               

               
               1-1224, gnl|Hg17|chr3 (109007848-109009057)
               

               
               1-1224, gnl|Mm7|chr16 (49958569-49957375)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr1 (29245601-29246817)
               

               
               1-1224, gnl|Hg17|chr3 (109007848-109009057)
               

               
               1-1224, gnl|Mm7|chr16 (49958569-49957375)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sug (0.254582)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               liv (0.146284)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.254582)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               liv (0.146284)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-1224, gnl\|bosTau2\|chr1 (29245601-29246817)
	1-1224, gnl\|Hg17\|chr3 (109007848-109009057)
	1-1224, gnl\|Mm7\|chr16 (49958569-49957375)

	sug (0.254582)
	mas (0.210305)
	cmu (0.186393)
	liv (0.146284)
	bla (0.124347)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)