Non-Coding RNA Search

Ss1.1-Pig4-TMW8016A10.5

Sequence:


               
               ACCGCAGCCGGGAGGCGATTGGAGTATGTCAGCCCCTTTTGAGGAACGCAGTGGGGTCGT
TCCGTGCGGGACGCCGTGGGGCCAGTGGTACCAGACGTTGGAGGAGGTGTTCATTGAAGT
TCAGGTCCCGCCAGGCACTCGCGCCCAGGATATCCAGTGCGGCCTGCAGAGCCGGCATGT
GGCGCTGGCCGTGGGTGGTCGCGAGATCCTCAAGGGCAAACTTTTTGATTCCACAATAGC
TGATGAGGGAACATGGACTTTGGAGGATAGGAAAATGGTCCGTATTGTTCTAACAAAGAC
AAAGAGAGATGCAGCGAATTGTTGGACTTCTCTTCTAGAATCTGAATATGCAGCTGATCC
TTGGGTGCAAGATCAAATGCAGAGAAAACTTACATTAGAGAGATTCCAGAAGGAAAATCC
TGGTTTTGACTTCAGCGGAGCAGAAATCTCAGGAAACTACAGTAAAGGTGGACCAGATTT
CTCAAATCTTGAGAAATAACCGCAATTTTCTCGCTGCATTTTGTGGATCCTAGCAGATGT
TGTCAGCTTAATCAAAGGAACAGATTATGTGGTGGAAGAAAAACGTGGATGCCTCCAGTT
AACAAATTGCAAAAATATATTTAAATATGGTTCTAAAAATTGCATTCAAACATGATTTAC
ATAGGAAACATCCTAAATACTGTGGGAACTATTCTATTGATATATGGTAACTTTTTTTTG
GACTTCTTTTTTCTCAGCATGAATTTTTTATATGCTGCATTTTAGTAATTTCATATTTAA
CCTGGATTTTTAATACAAAAAACATTAGGGTATAGATCATGTGAGATGACAGGTGCCTTC
AGGGAAAATTAAGTTTTTCTTTCAGTAAGTGTGATGCAAGAATAATACTCAATAAAGTTT
TCTAAATAGGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGCAGCCGGGAGGCGATTGGAGTATGTCAGCCCCTTTTGAGGAACGCAGTGGGGTCGT
TCCGTGCGGGACGCCGTGGGGCCAGTGGTACCAGACGTTGGAGGAGGTGTTCATTGAAGT
TCAGGTCCCGCCAGGCACTCGCGCCCAGGATATCCAGTGCGGCCTGCAGAGCCGGCATGT
GGCGCTGGCCGTGGGTGGTCGCGAGATCCTCAAGGGCAAACTTTTTGATTCCACAATAGC
TGATGAGGGAACATGGACTTTGGAGGATAGGAAAATGGTCCGTATTGTTCTAACAAAGAC
AAAGAGAGATGCAGCGAATTGTTGGACTTCTCTTCTAGAATCTGAATATGCAGCTGATCC
TTGGGTGCAAGATCAAATGCAGAGAAAACTTACATTAGAGAGATTCCAGAAGGAAAATCC
TGGTTTTGACTTCAGCGGAGCAGAAATCTCAGGAAACTACAGTAAAGGTGGACCAGATTT
CTCAAATCTTGAGAAATAACCGCAATTTTCTCGCTGCATTTTGTGGATCCTAGCAGATGT
TGTCAGCTTAATCAAAGGAACAGATTATGTGGTGGAAGAAAAACGTGGATGCCTCCAGTT
AACAAATTGCAAAAATATATTTAAATATGGTTCTAAAAATTGCATTCAAACATGATTTAC
ATAGGAAACATCCTAAATACTGTGGGAACTATTCTATTGATATATGGTAACTTTTTTTTG
GACTTCTTTTTTCTCAGCATGAATTTTTTATATGCTGCATTTTAGTAATTTCATATTTAA
CCTGGATTTTTAATACAAAAAACATTAGGGTATAGATCATGTGAGATGACAGGTGCCTTC
AGGGAAAATTAAGTTTTTCTTTCAGTAAGTGTGATGCAAGAATAATACTCAATAAAGTTT
TCTAAATAGGAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56206764|emb|CAI25426.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56206764|emb|CAI25426.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               305-422, - strand, RNAz p=0.927793

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-422, - strand, RNAz p=0.927793

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-497, gnl|bosTau2|chrX (12078065-12078565)
               

               
               7-497, gnl|Hg17|chr5 (162819652-162813553)
               

               
               7-497, gnl|Mm7|chrX (56783617-56784171)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-497, gnl|bosTau2|chrX (12078065-12078565)
               

               
               7-497, gnl|Hg17|chr5 (162819652-162813553)
               

               
               7-497, gnl|Mm7|chrX (56783617-56784171)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               cje (0.330469)
               

               
               bfe (0.299715)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               bfe (0.299715)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	7-497, gnl\|bosTau2\|chrX (12078065-12078565)
	7-497, gnl\|Hg17\|chr5 (162819652-162813553)
	7-497, gnl\|Mm7\|chrX (56783617-56784171)

	cje (0.330469)
	bfe (0.299715)
	ste (0.270416)
	ret (0.257467)
	sug (0.254582)
	tes (0.207814)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	fty (0.17584)
	duo (0.172801)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	ova (0.129132)
	bla (0.124347)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)