Non-Coding RNA Search

Ss1.1-Pig4-TMW8016A13.5

Sequence:


               
               CAGGCATGAAATGCAGCCTTAGGAGGAACGTGTCCCACATGTGAAGTGACTGGAAAGAAG
TAAGTAGCAGCAGAAATAAAAACCGCCTCAGCTTTCCTGGGCGTGAGGCGTCCTCCTCTG
TGCTTGCGACCAGTGACGTCCTGCAGCTTGTTGTGCCCCCACAGTTTTGAGGATTGAGAG
ATAGCACGTTGCCCCCGCTGTTTGACACAGAGCCGTGACATTGCTGGTGTTGCCGCCAGG
TCGGTAGCCAAGGTGCCCATCCCTTCTCCCCTGGACTTGACCTGACTCGTTCGTCTGTGC
TCCGTTAAGTCCGCCTCTCTCCCCTTAGCCAAAGTCTGTCTCTGAATTTGCTGAGAAGAT
TGTCCTCGCCCCTCTTTTTTAGATGTTGTGTTCTGTCCTCTTTCTAGCCTGAGACGTTGA
CCCCGGGTGTAGATATTTATCTGGAGTTGGAAAGAGTTCTTTTTCTGAACCTCATGCCTA
CCTGGTAGTATCTGTTGGGCATTTTCCCTGGAGCATTGGCTAGAGCCGCTCTGTTGTCGT
ATTCCTGGATTCTCTTCCCCTTTTCCATAAATATCAGTCTTCTGTATTCTTGCCAATTTT
TGTGGCTCCCGCCACGTAAAAAGCCAGAAACCCTTAACCCTAATATGGCCCAGTACTACC
TTTTCAAATTCTGAAAGGCTGTGACCACTTTTAACTCTGTTCTCTGTGCTCCTCCATGTA
GCCTTAAAATGTGGGCTTTTGTGAAGACCACTTTCAAACACAGGAGCATTGAAACCTGAT
TGGGATACTGCCAGAACAGGTAGTTTTGAAACAAGGGAAGGACATGGTCTATCCACTCGA
CATTGTCGTTGGCAGTTGCTCCCTTAAAGCCCTTTCCGTACATGAGGATGGTCAGGGAGG
AAAATGGAGAAGCTCTGTTAATTTCTGGTGAGTAAGACTTGGGGAATATTTGGCAATGGC
AAGAAAAATAAATGACTCTGTGTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCATGAAATGCAGCCTTAGGAGGAACGTGTCCCACATGTGAAGTGACTGGAAAGAAG
TAAGTAGCAGCAGAAATAAAAACCGCCTCAGCTTTCCTGGGCGTGAGGCGTCCTCCTCTG
TGCTTGCGACCAGTGACGTCCTGCAGCTTGTTGTGCCCCCACAGTTTTGAGGATTGAGAG
ATAGCACGTTGCCCCCGCTGTTTGACACAGAGCCGTGACATTGCTGGTGTTGCCGCCAGG
TCGGTAGCCAAGGTGCCCATCCCTTCTCCCCTGGACTTGACCTGACTCGTTCGTCTGTGC
TCCGTTAAGTCCGCCTCTCTCCCCTTAGCCAAAGTCTGTCTCTGAATTTGCTGAGAAGAT
TGTCCTCGCCCCTCTTTTTTAGATGTTGTGTTCTGTCCTCTTTCTAGCCTGAGACGTTGA
CCCCGGGTGTAGATATTTATCTGGAGTTGGAAAGAGTTCTTTTTCTGAACCTCATGCCTA
CCTGGTAGTATCTGTTGGGCATTTTCCCTGGAGCATTGGCTAGAGCCGCTCTGTTGTCGT
ATTCCTGGATTCTCTTCCCCTTTTCCATAAATATCAGTCTTCTGTATTCTTGCCAATTTT
TGTGGCTCCCGCCACGTAAAAAGCCAGAAACCCTTAACCCTAATATGGCCCAGTACTACC
TTTTCAAATTCTGAAAGGCTGTGACCACTTTTAACTCTGTTCTCTGTGCTCCTCCATGTA
GCCTTAAAATGTGGGCTTTTGTGAAGACCACTTTCAAACACAGGAGCATTGAAACCTGAT
TGGGATACTGCCAGAACAGGTAGTTTTGAAACAAGGGAAGGACATGGTCTATCCACTCGA
CATTGTCGTTGGCAGTTGCTCCCTTAAAGCCCTTTCCGTACATGAGGATGGTCAGGGAGG
AAAATGGAGAAGCTCTGTTAATTTCTGGTGAGTAAGACTTGGGGAATATTTGGCAATGGC
AAGAAAAATAAATGACTCTGTGTTAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               583-698, - strand, RNAz p=0.978998
               

               
               585-701, - strand, RNAz p=0.938565

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               583-698, - strand, RNAz p=0.978998
               

               
               585-701, - strand, RNAz p=0.938565

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               139-995, gnl|bosTau2|chr4 (49625558-49624687)
               

               
               139-995, gnl|Hg17|chr2 (27756766-27757612)
               

               
               139-995, gnl|Mm7|chr5 (30513495-30514270)
               


               
               140-981, gnl|bosTau2|chr11 (52873820-52872963)
               

               
               140-981, gnl|Hg17|chr2 (27756769-27757606)
               

               
               140-981, gnl|Mm7|chr5 (30513495-30514264)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-995, gnl|bosTau2|chr4 (49625558-49624687)
               

               
               139-995, gnl|Hg17|chr2 (27756766-27757612)
               

               
               139-995, gnl|Mm7|chr5 (30513495-30514270)
               


               
               140-981, gnl|bosTau2|chr11 (52873820-52872963)
               

               
               140-981, gnl|Hg17|chr2 (27756769-27757606)
               

               
               140-981, gnl|Mm7|chr5 (30513495-30514264)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	583-698, - strand, RNAz p=0.978998
	585-701, - strand, RNAz p=0.938565

	139-995, gnl\|bosTau2\|chr4 (49625558-49624687)
	139-995, gnl\|Hg17\|chr2 (27756766-27757612)
	139-995, gnl\|Mm7\|chr5 (30513495-30514270)

	140-981, gnl\|bosTau2\|chr11 (52873820-52872963)
	140-981, gnl\|Hg17\|chr2 (27756769-27757606)
	140-981, gnl\|Mm7\|chr5 (30513495-30514264)

	cbe (0.478469)
	cte (0.29274)
	liv (0.292569)
	hea (0.204499)
	fcc (0.197785)
	sto (0.179824)
	spl (0.143184)
	ssp (0.13552)
	ste (0.135208)
	thg (0.126791)
	bla (0.124347)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)