Non-Coding RNA Search

Ss1.1-Pig4-TMW8016B05.3

Sequence:


               
               GTGACCCGCAGCCGCAGCCGGGGACCCGTGGCCGGGCCGCGGGGGGTTGGGGAGGACGCC
GTGCGGCTCCGGATGGGAGAGGCGGCTGCAGAAGGAAGGAAAAGCTGCAGCCCCGTGAAG
CATCCACAGAAGACCCAAAGGCTCAAAGTGGCCTATGAGGCCCCAGGAGGTGAGAAAGGA
GAGGGGACCGAGCCGCTCGTGGCGCCAGGCTGGGAGCCTCCGGACTGGCGGAAGCAGCTG
GAGAACATCCGGGCCATGCGGAGTGGGAGGGACGCACCCGTGGACCAGCTGGGGGCTGAG
CACTGCTACGACCCCAGTGCACCCCCAAAGGTGCGGAGGTACCAGGTGCTGCTGTCACTG
ATGCTCTCCAGCCAGACCAAAGACCAGGTGACAGCGGGTGCCATGCAGCGGCTGCGGGCC
CATGGCCTGACGGTGGACAGCATTCTGCAGATGGACGACAGCACGCTGGGCACACTCATC
TACCCCGTGGGCTTTTGGAGGAGCAAGGTGAAGTACATAAAGCAGACCAGTGCTATCCTG
CAGCAGCGCTACGGTGGAGACATCCCAGCCTCTGTGCCAGAGCTGGTGGCGCTGCCAGGC
GTCGGGCCCAAGATGGCACACTTGGCCATGGCCGTGGCCTGGGGCACCGTGTCAGGCATT
GCAGTGGACACACACGTACACAGAATCGCCGGCCGACTCAAGTGGACCAAGAAGGCAACC
AAGTCCCCTGAGAAGACCCGCACTGCCTTGGAGGAGTGGCTGCCCAGGGAGCTATGGAGT
GAGATCAATGGACTGCTAGTGGGCTTCGGCCAGCAGACCTGCCTGCCCGTCCGCCCCCGC
TGCCAGGCCTGCCTCAACCGGGCCCTGTGCCCGGCTGCACAGGGACTCTGAAGGCTTGCA
ACCTCTGCCCTGGGCCACTCTGGCCACCGTCTGTTATGTGCCTCTGCTAGGGATTCGCAG
CCTGTTTGTAATAAAGCTTGGGGGTGTTTGCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCCGCAGCCGCAGCCGGGGACCCGTGGCCGGGCCGCGGGGGGTTGGGGAGGACGCC
GTGCGGCTCCGGATGGGAGAGGCGGCTGCAGAAGGAAGGAAAAGCTGCAGCCCCGTGAAG
CATCCACAGAAGACCCAAAGGCTCAAAGTGGCCTATGAGGCCCCAGGAGGTGAGAAAGGA
GAGGGGACCGAGCCGCTCGTGGCGCCAGGCTGGGAGCCTCCGGACTGGCGGAAGCAGCTG
GAGAACATCCGGGCCATGCGGAGTGGGAGGGACGCACCCGTGGACCAGCTGGGGGCTGAG
CACTGCTACGACCCCAGTGCACCCCCAAAGGTGCGGAGGTACCAGGTGCTGCTGTCACTG
ATGCTCTCCAGCCAGACCAAAGACCAGGTGACAGCGGGTGCCATGCAGCGGCTGCGGGCC
CATGGCCTGACGGTGGACAGCATTCTGCAGATGGACGACAGCACGCTGGGCACACTCATC
TACCCCGTGGGCTTTTGGAGGAGCAAGGTGAAGTACATAAAGCAGACCAGTGCTATCCTG
CAGCAGCGCTACGGTGGAGACATCCCAGCCTCTGTGCCAGAGCTGGTGGCGCTGCCAGGC
GTCGGGCCCAAGATGGCACACTTGGCCATGGCCGTGGCCTGGGGCACCGTGTCAGGCATT
GCAGTGGACACACACGTACACAGAATCGCCGGCCGACTCAAGTGGACCAAGAAGGCAACC
AAGTCCCCTGAGAAGACCCGCACTGCCTTGGAGGAGTGGCTGCCCAGGGAGCTATGGAGT
GAGATCAATGGACTGCTAGTGGGCTTCGGCCAGCAGACCTGCCTGCCCGTCCGCCCCCGC
TGCCAGGCCTGCCTCAACCGGGCCCTGTGCCCGGCTGCACAGGGACTCTGAAGGCTTGCA
ACCTCTGCCCTGGGCCACTCTGGCCACCGTCTGTTATGTGCCTCTGCTAGGGATTCGCAG
CCTGTTTGTAATAAAGCTTGGGGGTGTTTGCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26329393|dbj|BAC28435.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329393|dbj|BAC28435.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               500-619, + strand, RNAz p=0.872395
               

               
               521-661, + strand, RNAz p=0.768325

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               500-619, + strand, RNAz p=0.872395
               

               
               521-661, + strand, RNAz p=0.768325

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               87-343, gnl|bosTau2|chr25 (3008601-3008857)
               

               
               87-343, gnl|Hg17|chr16 (2036373-2036116)
               

               
               87-343, gnl|Mm7|chr17 (22814746-22815000)
               


               
               482-661, gnl|bosTau2|chr25 (3010342-3010520)
               

               
               482-661, gnl|canFam2|chr6 (41943699-41943500)
               

               
               482-661, gnl|danRer3|chrNA (148111760-148111940)
               

               
               482-661, gnl|echTel1|scaffold_142943 (306-125)
               

               
               482-661, gnl|fr1|chrUn (217943624-217943454)
               

               
               482-661, gnl|galGal2|chr14 (8305000-8305184)
               

               
               482-661, gnl|hg17|chr16 (2033561-2033745)
               

               
               482-661, gnl|Hg17|chr16 (2033747-2033569)
               

               
               482-661, gnl|loxAfr1|scaffold_72061 (4008-4208)
               

               
               482-661, gnl|mm7|chr17 (22816593-22816399)
               

               
               482-661, gnl|Mm7|chr17 (22816395-22816572)
               

               
               482-661, gnl|monDom2|scaffold_5 (121251139-121250953)
               

               
               482-661, gnl|oryCun1|scaffold_192826 (7559-7754)
               

               
               482-661, gnl|rheMac2|chr20 (2033389-2033584)
               

               
               482-661, gnl|rn3|chr10 (13886421-13886227)
               

               
               482-661, gnl|tetNig1|chr18 (2031418-2031245)
               

               
               482-661, gnl|xenTro1|scaffold_12 (1053606-1053772)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-343, gnl|bosTau2|chr25 (3008601-3008857)
               

               
               87-343, gnl|Hg17|chr16 (2036373-2036116)
               

               
               87-343, gnl|Mm7|chr17 (22814746-22815000)
               


               
               482-661, gnl|bosTau2|chr25 (3010342-3010520)
               

               
               482-661, gnl|canFam2|chr6 (41943699-41943500)
               

               
               482-661, gnl|danRer3|chrNA (148111760-148111940)
               

               
               482-661, gnl|echTel1|scaffold_142943 (306-125)
               

               
               482-661, gnl|fr1|chrUn (217943624-217943454)
               

               
               482-661, gnl|galGal2|chr14 (8305000-8305184)
               

               
               482-661, gnl|hg17|chr16 (2033561-2033745)
               

               
               482-661, gnl|Hg17|chr16 (2033747-2033569)
               

               
               482-661, gnl|loxAfr1|scaffold_72061 (4008-4208)
               

               
               482-661, gnl|mm7|chr17 (22816593-22816399)
               

               
               482-661, gnl|Mm7|chr17 (22816395-22816572)
               

               
               482-661, gnl|monDom2|scaffold_5 (121251139-121250953)
               

               
               482-661, gnl|oryCun1|scaffold_192826 (7559-7754)
               

               
               482-661, gnl|rheMac2|chr20 (2033389-2033584)
               

               
               482-661, gnl|rn3|chr10 (13886421-13886227)
               

               
               482-661, gnl|tetNig1|chr18 (2031418-2031245)
               

               
               482-661, gnl|xenTro1|scaffold_12 (1053606-1053772)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fli (0.202881)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	500-619, + strand, RNAz p=0.872395
	521-661, + strand, RNAz p=0.768325

	87-343, gnl\|bosTau2\|chr25 (3008601-3008857)
	87-343, gnl\|Hg17\|chr16 (2036373-2036116)
	87-343, gnl\|Mm7\|chr17 (22814746-22815000)

	482-661, gnl\|bosTau2\|chr25 (3010342-3010520)
	482-661, gnl\|canFam2\|chr6 (41943699-41943500)
	482-661, gnl\|danRer3\|chrNA (148111760-148111940)
	482-661, gnl\|echTel1\|scaffold_142943 (306-125)
	482-661, gnl\|fr1\|chrUn (217943624-217943454)
	482-661, gnl\|galGal2\|chr14 (8305000-8305184)
	482-661, gnl\|hg17\|chr16 (2033561-2033745)
	482-661, gnl\|Hg17\|chr16 (2033747-2033569)
	482-661, gnl\|loxAfr1\|scaffold_72061 (4008-4208)
	482-661, gnl\|mm7\|chr17 (22816593-22816399)
	482-661, gnl\|Mm7\|chr17 (22816395-22816572)
	482-661, gnl\|monDom2\|scaffold_5 (121251139-121250953)
	482-661, gnl\|oryCun1\|scaffold_192826 (7559-7754)
	482-661, gnl\|rheMac2\|chr20 (2033389-2033584)
	482-661, gnl\|rn3\|chr10 (13886421-13886227)
	482-661, gnl\|tetNig1\|chr18 (2031418-2031245)
	482-661, gnl\|xenTro1\|scaffold_12 (1053606-1053772)

	fli (0.202881)
	jej (0.197844)
	col (0.195008)
	csp (0.161186)
	cag (0.151194)
	cty (0.10408)
	eje (0.0988338)