Non-Coding RNA Search

Ss1.1-Pig4-TMW8016B09.3

Sequence:


               
               TATGGCTTTATGCTGAAGATCTGCTGGATGCGTCCTCTGGTGTGTGTTGTAGGCCTTTAC
TGTGGTGTCTCCTGCTTTATTATACTGTGACTTGTTAGGAAGCCCAGGGCCTCACTTGGC
TCTCCCTTGGGAGAGGTGAGGGTGCACCTTTATGAACATGGAAAGGTTCATCACAGCAGT
TGCCCCAGCTTGCTACTCCTCTCCACACCAAGCTTTCCCTGTTTTTCAGCTGATGGGGTG
GGTGTTTGGGATGTATTTTTCCCCCAATTTGCCATGGTATTGCACTATTAATACCAGCCC
CCGAAATGAAAGGAGCCAACCACACTGGTGTGTACAATCAGACAAGCAAGGTTGTATATA
AAGGAAATTTGAGCAAGCTGCCCTGAAGAAAGGCATAGTGACAAGATGAGAGAGATGCAT
TGTTTGGAGATGTGTTAGCCAGTGCCCTTCTTCCCCACGAGCCCCCCCAAGGCTCAGAGC
GGTACTGGCTTTTAAAGGGAAAGGCCTTCATTTCTTCGTTTATCCCCCCAGCAGCGCTGG
AGAGCGAGGTGGCTTCAATAAGCCTGGTGGTAAGTTTTTGAGTATTACCATGGATAGTGT
TAAAAAAAATACAGTCAGTTTTTAGAAAACTATAATTTTTTGTTAGTTTCATAAGCGGTT
TAAAAATGATCTATACAAAAGAGACTAATGGGTACTGCCGGCATTGTCTTAGGGGTAATA
AGGTTAACCTATGGTTACAAAACAAAGGGTAACTTGAAGTATTGAGCAACTGCTTCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGGCTTTATGCTGAAGATCTGCTGGATGCGTCCTCTGGTGTGTGTTGTAGGCCTTTAC
TGTGGTGTCTCCTGCTTTATTATACTGTGACTTGTTAGGAAGCCCAGGGCCTCACTTGGC
TCTCCCTTGGGAGAGGTGAGGGTGCACCTTTATGAACATGGAAAGGTTCATCACAGCAGT
TGCCCCAGCTTGCTACTCCTCTCCACACCAAGCTTTCCCTGTTTTTCAGCTGATGGGGTG
GGTGTTTGGGATGTATTTTTCCCCCAATTTGCCATGGTATTGCACTATTAATACCAGCCC
CCGAAATGAAAGGAGCCAACCACACTGGTGTGTACAATCAGACAAGCAAGGTTGTATATA
AAGGAAATTTGAGCAAGCTGCCCTGAAGAAAGGCATAGTGACAAGATGAGAGAGATGCAT
TGTTTGGAGATGTGTTAGCCAGTGCCCTTCTTCCCCACGAGCCCCCCCAAGGCTCAGAGC
GGTACTGGCTTTTAAAGGGAAAGGCCTTCATTTCTTCGTTTATCCCCCCAGCAGCGCTGG
AGAGCGAGGTGGCTTCAATAAGCCTGGTGGTAAGTTTTTGAGTATTACCATGGATAGTGT
TAAAAAAAATACAGTCAGTTTTTAGAAAACTATAATTTTTTGTTAGTTTCATAAGCGGTT
TAAAAATGATCTATACAAAAGAGACTAATGGGTACTGCCGGCATTGTCTTAGGGGTAATA
AGGTTAACCTATGGTTACAAAACAAAGGGTAACTTGAAGTATTGAGCAACTGCTTCTGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               42-158, - strand, RNAz p=0.518175
               

               
               537-650, + strand, RNAz p=0.837291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-158, - strand, RNAz p=0.518175
               

               
               537-650, + strand, RNAz p=0.837291

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-780, gnl|bosTau2|chr17 (39327091-39327870)
               

               
               3-780, gnl|Hg17|chr22 (28011570-28012357)
               

               
               3-780, gnl|Mm7|chr11 (5032073-5031273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-780, gnl|bosTau2|chr17 (39327091-39327870)
               

               
               3-780, gnl|Hg17|chr22 (28011570-28012357)
               

               
               3-780, gnl|Mm7|chr11 (5032073-5031273)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	42-158, - strand, RNAz p=0.518175
	537-650, + strand, RNAz p=0.837291

	3-780, gnl\|bosTau2\|chr17 (39327091-39327870)
	3-780, gnl\|Hg17\|chr22 (28011570-28012357)
	3-780, gnl\|Mm7\|chr11 (5032073-5031273)