Non-Coding RNA Search

Ss1.1-Pig4-TMW8016B14.5

Sequence:


               
               AGCCCTCCTGGATGCTAGTCTGATTTTGTCACGGCTGAGCCATGATGGGAACTCTAGGAA
TTCTTTATTGTGCCTAGCAGTGCAATTCAAAGTATAATTCACCATTCTAAAATTCCTAGA
CTATCATAATAGCTCTTAGTAAAATCTAATAATATGCTGATTGTTTTATGAATCCCAAAT
TAGTAAACTTCAGTAAAGACCATGTAATTGTGATACTTCTCTTTAAAAAAAAAGATTTGC
ATTTTTGACCACTTGTGTCCTTTAGGAAGATGCTTTCAGACCATTGTACACTAGCCATAT
CCCAGGCTGTGAGCATGACCTCAACCTTGAGGACCTAGTGCCCTTATATGTAGAATGACC
ATGTATTCTAGGTTGCCTCAGACAGTCTCAGTTCACACCTGTTGTCCCTGTGTAATGTGT
AATTATTAATAGTGTCCTATTTCCTCTCAGAAGTGTCTTGATTAGGATGGTAAATTACAT
GCTCATCCTAATTATTTGGGATTAAATTGTTTATGATGCTGCCTCTTTGATGCACCTCCT
CTACCGTTATATTTGCTGTGTTTCTTACATTCCTTAAATTGGATGTGGGAGTGATAGTCT
TACAATATTTTAGCATATGTTTTTATTATAATATTTTAATTTGTGGTTTTAATTGTTCCA
CACAATATTTTTACTTCATTTTGACTTTATTTTTATTATCGTATAATAATAATATATATA
ACAAAATTTGACATTTTAACTTTTTCGAAGATTAGTTTTTTATGAATGTATGGTTGATTT
ACACTGTGCCAATTTCTGTTGATTTTTAACCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCTCCTGGATGCTAGTCTGATTTTGTCACGGCTGAGCCATGATGGGAACTCTAGGAA
TTCTTTATTGTGCCTAGCAGTGCAATTCAAAGTATAATTCACCATTCTAAAATTCCTAGA
CTATCATAATAGCTCTTAGTAAAATCTAATAATATGCTGATTGTTTTATGAATCCCAAAT
TAGTAAACTTCAGTAAAGACCATGTAATTGTGATACTTCTCTTTAAAAAAAAAGATTTGC
ATTTTTGACCACTTGTGTCCTTTAGGAAGATGCTTTCAGACCATTGTACACTAGCCATAT
CCCAGGCTGTGAGCATGACCTCAACCTTGAGGACCTAGTGCCCTTATATGTAGAATGACC
ATGTATTCTAGGTTGCCTCAGACAGTCTCAGTTCACACCTGTTGTCCCTGTGTAATGTGT
AATTATTAATAGTGTCCTATTTCCTCTCAGAAGTGTCTTGATTAGGATGGTAAATTACAT
GCTCATCCTAATTATTTGGGATTAAATTGTTTATGATGCTGCCTCTTTGATGCACCTCCT
CTACCGTTATATTTGCTGTGTTTCTTACATTCCTTAAATTGGATGTGGGAGTGATAGTCT
TACAATATTTTAGCATATGTTTTTATTATAATATTTTAATTTGTGGTTTTAATTGTTCCA
CACAATATTTTTACTTCATTTTGACTTTATTTTTATTATCGTATAATAATAATATATATA
ACAAAATTTGACATTTTAACTTTTTCGAAGATTAGTTTTTTATGAATGTATGGTTGATTT
ACACTGTGCCAATTTCTGTTGATTTTTAACCATTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-745, gnl|bosTau2|chr11 (13511521-13510861)
               

               
               55-745, gnl|Hg17|chr2 (44497787-44497085)
               

               
               55-745, gnl|Mm7|chr17 (83382956-83382324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-745, gnl|bosTau2|chr11 (13511521-13510861)
               

               
               55-745, gnl|Hg17|chr2 (44497787-44497085)
               

               
               55-745, gnl|Mm7|chr17 (83382956-83382324)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sin (0.174948)

	55-745, gnl\|bosTau2\|chr11 (13511521-13510861)
	55-745, gnl\|Hg17\|chr2 (44497787-44497085)
	55-745, gnl\|Mm7\|chr17 (83382956-83382324)