Non-Coding RNA Search

Ss1.1-Pig4-TMW8016C16.5

Sequence:


               
               GAGCCGGCGGCAAGGCAATGAGCGGGGAGACAGGCCGACATCCGTAGCGCCCCCTCCCGG
GGAGATCGAACCGGGCAGTGGGGTCCGCATCGTGGTAGAGGGGAGCCGGCGGCAAGGCAA
TGAGCGGGGAGACAGGGCCGACATCCGTAGCGCCCCCTCCCGGGGAGATCGAACCGGGCA
GTGGGGTCCGCATCGTGGTTGAGTACTGTGAACCCTGCGGCTTCGAAGCGACCTACCTGG
AGCTGGCGAGTGCCGTGAAGGAGCAGTATCCGGGCATCGAGATCGAGTCGCGCCTGGGGG
GCACAGGGGCCTTTGAGATCGAAATCAATGGACAGCTGGTGTTCTCCAAGCTGGAGAATG
GGGGCTTTCCTTACGAGAAAGATCTCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAAC
CCCTAGAAAAGATTACCAATAGCCGCCCTCCCTGCGTCATCCTGTGACTACATGTGTTTC
TAGGTTCCTGCTCTTTTGGGATCCAAGCCTTGGTTGCCCCTTTGGTCCTGCTGAGGGCTC
CCCACTGCCTCTTTCACCTCACTTAGCTCCTGGTAACTAAGAGACCCTGGCCCCCACTTC
GCACCTTTGGGTACCGGGAGGGAATAGATGCATCTGTGGTCTTGGGGGTGGAAGGAAGAC
CCTCTCCATGGACACTTCCAGTCACTTTATGCCCCTTTCCCAGGATCAGTGCCCACAAAA
GCCTGCATCCCCCTCCAGCTTAGCCGTACCTGTCAGATGCTACCATAGTTGTAATTTATT
TTCACTAGCCCCAGGCAATGTCAGCTATCAGCAATAAAGTGGCACTGCAAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCGGCGGCAAGGCAATGAGCGGGGAGACAGGCCGACATCCGTAGCGCCCCCTCCCGG
GGAGATCGAACCGGGCAGTGGGGTCCGCATCGTGGTAGAGGGGAGCCGGCGGCAAGGCAA
TGAGCGGGGAGACAGGGCCGACATCCGTAGCGCCCCCTCCCGGGGAGATCGAACCGGGCA
GTGGGGTCCGCATCGTGGTTGAGTACTGTGAACCCTGCGGCTTCGAAGCGACCTACCTGG
AGCTGGCGAGTGCCGTGAAGGAGCAGTATCCGGGCATCGAGATCGAGTCGCGCCTGGGGG
GCACAGGGGCCTTTGAGATCGAAATCAATGGACAGCTGGTGTTCTCCAAGCTGGAGAATG
GGGGCTTTCCTTACGAGAAAGATCTCATTGAGGCCATCCGAAGAGCCAGTAACGGAGAAC
CCCTAGAAAAGATTACCAATAGCCGCCCTCCCTGCGTCATCCTGTGACTACATGTGTTTC
TAGGTTCCTGCTCTTTTGGGATCCAAGCCTTGGTTGCCCCTTTGGTCCTGCTGAGGGCTC
CCCACTGCCTCTTTCACCTCACTTAGCTCCTGGTAACTAAGAGACCCTGGCCCCCACTTC
GCACCTTTGGGTACCGGGAGGGAATAGATGCATCTGTGGTCTTGGGGGTGGAAGGAAGAC
CCTCTCCATGGACACTTCCAGTCACTTTATGCCCCTTTCCCAGGATCAGTGCCCACAAAA
GCCTGCATCCCCCTCCAGCTTAGCCGTACCTGTCAGATGCTACCATAGTTGTAATTTATT
TTCACTAGCCCCAGGCAATGTCAGCTATCAGCAATAAAGTGGCACTGCAAACAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57091101|ref|XP_537653.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57091101|ref|XP_537653.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               539-655, - strand, RNAz p=0.902396

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-655, - strand, RNAz p=0.902396

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-307, gnl|bosTau2|chr19 (32369083-32368789)
               

               
               15-307, gnl|Hg17|chr17 (35140277-35139972)
               

               
               15-307, gnl|Mm7|chr11 (98547988-98547685)
               


               
               384-710, gnl|bosTau2|chr19 (32368190-32367855)
               

               
               384-710, gnl|Hg17|chr17 (35139384-35139065)
               

               
               384-710, gnl|Mm7|chr11 (98547184-98546886)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-307, gnl|bosTau2|chr19 (32369083-32368789)
               

               
               15-307, gnl|Hg17|chr17 (35140277-35139972)
               

               
               15-307, gnl|Mm7|chr11 (98547988-98547685)
               


               
               384-710, gnl|bosTau2|chr19 (32368190-32367855)
               

               
               384-710, gnl|Hg17|chr17 (35139384-35139065)
               

               
               384-710, gnl|Mm7|chr11 (98547184-98546886)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               mas (0.42061)
               

               
               amn (0.417711)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	15-307, gnl\|bosTau2\|chr19 (32369083-32368789)
	15-307, gnl\|Hg17\|chr17 (35140277-35139972)
	15-307, gnl\|Mm7\|chr11 (98547988-98547685)

	384-710, gnl\|bosTau2\|chr19 (32368190-32367855)
	384-710, gnl\|Hg17\|chr17 (35139384-35139065)
	384-710, gnl\|Mm7\|chr11 (98547184-98546886)

	mas (0.42061)
	amn (0.417711)
	ton (0.351)
	cga (0.279096)
	fce (0.271592)
	ssp (0.271039)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	ill (0.175593)
	fbs (0.175346)
	fhi (0.169578)
	cki (0.165235)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	hlv (0.139256)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)