Non-Coding RNA Search

Ss1.1-Pig4-TMW8016D04.5

Sequence:


               
               CTTCAGAAACTCGGCCTCGTTCCAGAGAAACACAAAGGCTTCAGGACCTTTGATATAGAA
GAGAAAAACAGGAATAACATTTGTTCCTACCTAGGTTTGATGCTAGTACACAGTAGAAAA
CCGCAAGAGATGATTGATATTTGGTCTCGACTGCAAAATGCTCATTTAAGTTGCTAAATT
ATGTACAAACTCCGTTTTGCATAGAAAGACATAGCTAACATAGTTCCCATGTTGTGTGTT
CTCTCACATTAGGGGTAATTTCTGTGTTCAACCATCAAAATTGCCTTTATAAAGTAGTGT
CCATTTGAGGGCCTCTAAGCCCTTCACTTGTGGTACTTTCTGAAAAGGGAAAGCAGAGGA
AGATCCTAATGTTTTCTGGCGGATATGGCAAGATGATTGGCTCCAACCCTTCCTGCTGGC
TTATGGCCATTGTTTTCTGATTTGCCTGCCTCGTCATCCGAAATCATGTTTCTGGAATTT
GACCATTTTAAGTTATTTTTGTTTTGCCCTCTTAAGAAGAATATTCCCGTTTCTCATTAT
AATGAGTGAATTATCTGCCATTTAGATTTCCATGAACCTATTGGCTACAAAGACATTGTT
ATACATGACTCAGTGGTTTTGTGAAGTGGGATTATGTTTGTTTTCATGTGATTTGGATGA
ATTTTTAAAGTTGTCTAGAAATGGATTTCTGTTGAAATTTCCTGCCACCCCAACAGTATT
TTCTTGCATTCATCTAATCAATCAGTTTTGCAGAATGAGAATCACTGTGTGGCATGTATC
CAGTTTATCTTGTTATGGTCTTATGGTCATAAGGATAGAAAGTTTAACTCTCTTGTATTT
GGCCTGCTGAGTGGTATCGTAATAATTCTGTTTCTAGTACTGGAAAATGAGTAGGAGTCC
ATAATCTTCAAACTGAAGATTGAATTGCCCCTAGCAACCATACTGTGTTTATGATTTTTC
ATCATGGACCAGAAACGCTTATGTAACTTTTGAACTTTAAGCAAAAAGATTGGAGTTGCA
AGACATTTTTACAAGTGGCTTGTCAGTTTAAAACTGCAGAATTCTGGAAGTTCCCTCGTG
GTACAGCAGGTTAAGGATCCAGCATTGCTGCAGCTGTGGCATGGGTCACAACTGTGTCAC
AGGTTCGATCCCTGGCCCAGGAATTTCCACACGCCGCAGGTGCAGCCCAAAAAAAAAAGG
CTGCATAATTCTGTTCTTGCCATATCGTCTCATATTCCTTATACAAAATTACTATTCTGA
GTAGTGACTGCTTCCCTGTCTCAGTGTAGAAGTGCCTGTGTTTTTATTTATTGTTCAGAC
ATTATAGACCAAACATTTTGTTAAATAAATTTTGTGTAATATTTTATTTGTATACAGTGT
TTATGACAAACTATTTAAAGCATGATGTTTTATGTGGCAACATGTACCATAAGCTAATTG
TTATTTTTGAATTTTAAAATTTGTTTTTTTAAATATTAAATAAAATTCTGCCAAACTGTT
GCTTATATATATGCTATCTTGTAACATGCTTTCTTTAAATATTTTTGTGTTACAGAAATG
AAGATTCTTAAAAGATATATATAATACTGGATACTGTAAAATGATGGAAATAAAATCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGAAACTCGGCCTCGTTCCAGAGAAACACAAAGGCTTCAGGACCTTTGATATAGAA
GAGAAAAACAGGAATAACATTTGTTCCTACCTAGGTTTGATGCTAGTACACAGTAGAAAA
CCGCAAGAGATGATTGATATTTGGTCTCGACTGCAAAATGCTCATTTAAGTTGCTAAATT
ATGTACAAACTCCGTTTTGCATAGAAAGACATAGCTAACATAGTTCCCATGTTGTGTGTT
CTCTCACATTAGGGGTAATTTCTGTGTTCAACCATCAAAATTGCCTTTATAAAGTAGTGT
CCATTTGAGGGCCTCTAAGCCCTTCACTTGTGGTACTTTCTGAAAAGGGAAAGCAGAGGA
AGATCCTAATGTTTTCTGGCGGATATGGCAAGATGATTGGCTCCAACCCTTCCTGCTGGC
TTATGGCCATTGTTTTCTGATTTGCCTGCCTCGTCATCCGAAATCATGTTTCTGGAATTT
GACCATTTTAAGTTATTTTTGTTTTGCCCTCTTAAGAAGAATATTCCCGTTTCTCATTAT
AATGAGTGAATTATCTGCCATTTAGATTTCCATGAACCTATTGGCTACAAAGACATTGTT
ATACATGACTCAGTGGTTTTGTGAAGTGGGATTATGTTTGTTTTCATGTGATTTGGATGA
ATTTTTAAAGTTGTCTAGAAATGGATTTCTGTTGAAATTTCCTGCCACCCCAACAGTATT
TTCTTGCATTCATCTAATCAATCAGTTTTGCAGAATGAGAATCACTGTGTGGCATGTATC
CAGTTTATCTTGTTATGGTCTTATGGTCATAAGGATAGAAAGTTTAACTCTCTTGTATTT
GGCCTGCTGAGTGGTATCGTAATAATTCTGTTTCTAGTACTGGAAAATGAGTAGGAGTCC
ATAATCTTCAAACTGAAGATTGAATTGCCCCTAGCAACCATACTGTGTTTATGATTTTTC
ATCATGGACCAGAAACGCTTATGTAACTTTTGAACTTTAAGCAAAAAGATTGGAGTTGCA
AGACATTTTTACAAGTGGCTTGTCAGTTTAAAACTGCAGAATTCTGGAAGTTCCCTCGTG
GTACAGCAGGTTAAGGATCCAGCATTGCTGCAGCTGTGGCATGGGTCACAACTGTGTCAC
AGGTTCGATCCCTGGCCCAGGAATTTCCACACGCCGCAGGTGCAGCCCAAAAAAAAAAGG
CTGCATAATTCTGTTCTTGCCATATCGTCTCATATTCCTTATACAAAATTACTATTCTGA
GTAGTGACTGCTTCCCTGTCTCAGTGTAGAAGTGCCTGTGTTTTTATTTATTGTTCAGAC
ATTATAGACCAAACATTTTGTTAAATAAATTTTGTGTAATATTTTATTTGTATACAGTGT
TTATGACAAACTATTTAAAGCATGATGTTTTATGTGGCAACATGTACCATAAGCTAATTG
TTATTTTTGAATTTTAAAATTTGTTTTTTTAAATATTAAATAAAATTCTGCCAAACTGTT
GCTTATATATATGCTATCTTGTAACATGCTTTCTTTAAATATTTTTGTGTTACAGAAATG
AAGATTCTTAAAAGATATATATAATACTGGATACTGTAAAATGATGGAAATAAAATCATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-329, gnl|bosTau2|chr1 (97530204-97529882)
               

               
               1-329, gnl|Hg17|chr2 (62362024-62362346)
               

               
               1-329, gnl|Mm7|chr11 (22788175-22787897)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr1 (97530204-97529882)
               

               
               1-329, gnl|Hg17|chr2 (62362024-62362346)
               

               
               1-329, gnl|Mm7|chr11 (22788175-22787897)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               fco (0.471624)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               rec (0.346141)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               spc (0.226732)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-329, gnl\|bosTau2\|chr1 (97530204-97529882)
	1-329, gnl\|Hg17\|chr2 (62362024-62362346)
	1-329, gnl\|Mm7\|chr11 (22788175-22787897)

	fco (0.471624)
	rec (0.346141)
	ski (0.29347)
	lin (0.291206)
	pla (0.267344)
	spc (0.226732)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	duo (0.172801)
	fhi (0.169578)
	cki (0.165235)
	tbr (0.154178)
	bfe (0.149858)
	spl (0.143184)
	csk (0.140746)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)