Non-Coding RNA Search

Ss1.1-Pig4-TMW8016D17.5

Sequence:


               
               ACTGGTTGATATGAAGATTGAATTTGGTGTTGATGTAACCACGAAAGAAATTGTTCTTGC
TGATGTCATTGATAATGACTCCTGGAGACTCTGGCCATCAGGAGATCGAAGCCAACAGAA
AAGACAAACAGTCCTATCGTGACCTCAAGGAAGTAACGCCTGAAGGGCTGCAGATGGTAA
AGAAGAACTTTGAGTGGGTTGCAGAGAGAGTAGAGTTGCTTCTGAAAACAGAAAGTCAGT
GCAGAGTTGTAGTATTGATGGGCTCGACCTCTGATCTTAGTCACTGTGAAAAAATTAAGA
AGGCTTGTGGGAATTTCGGCATTCCATGTGAACTTAGGGTAACATCTGCCCATAAAGGAC
CAGATGAAACTCTAAGGATTAAAGCTGAGTATGAAGGGGATGGCATCCCTACCGTGTTTG
TGGCAGTGGCGGGCAGAAGCAATGGTCTGGGACCAGTGATGTCTGGTAACACTGCATTTC
CAGTTATTAGCTGTCCCCCCCTCAGTCCAGACTGGGGGGCACAGGATGTGTGGTCTTCTC
TTCGATTACCCAGCGGTCTTGGCTGTTCAACCATACTTTCTCCAGAAGGATCAGCTCAGT
TTGCTGCTCAGATATTTGGATTAAATAACCATTTGGTATGGGCCAAGCTACGAGCAAACG
TATTAAACACATGGATTTCCTTGAAGCAGGCTGACAAGAAAATCAGAGAGGGCAATTTAT
GAGAAAGAACATTACTGCATATTTTTAGGACAAAAACTAATTTCCAATTTAGCTGCAGGG
AAAAGAAATCGAGCAAAATGAAGAAAAGATTTTAAATCAATCAGAAAATAAAATTTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGTTGATATGAAGATTGAATTTGGTGTTGATGTAACCACGAAAGAAATTGTTCTTGC
TGATGTCATTGATAATGACTCCTGGAGACTCTGGCCATCAGGAGATCGAAGCCAACAGAA
AAGACAAACAGTCCTATCGTGACCTCAAGGAAGTAACGCCTGAAGGGCTGCAGATGGTAA
AGAAGAACTTTGAGTGGGTTGCAGAGAGAGTAGAGTTGCTTCTGAAAACAGAAAGTCAGT
GCAGAGTTGTAGTATTGATGGGCTCGACCTCTGATCTTAGTCACTGTGAAAAAATTAAGA
AGGCTTGTGGGAATTTCGGCATTCCATGTGAACTTAGGGTAACATCTGCCCATAAAGGAC
CAGATGAAACTCTAAGGATTAAAGCTGAGTATGAAGGGGATGGCATCCCTACCGTGTTTG
TGGCAGTGGCGGGCAGAAGCAATGGTCTGGGACCAGTGATGTCTGGTAACACTGCATTTC
CAGTTATTAGCTGTCCCCCCCTCAGTCCAGACTGGGGGGCACAGGATGTGTGGTCTTCTC
TTCGATTACCCAGCGGTCTTGGCTGTTCAACCATACTTTCTCCAGAAGGATCAGCTCAGT
TTGCTGCTCAGATATTTGGATTAAATAACCATTTGGTATGGGCCAAGCTACGAGCAAACG
TATTAAACACATGGATTTCCTTGAAGCAGGCTGACAAGAAAATCAGAGAGGGCAATTTAT
GAGAAAGAACATTACTGCATATTTTTAGGACAAAAACTAATTTCCAATTTAGCTGCAGGG
AAAAGAAATCGAGCAAAATGAAGAAAAGATTTTAAATCAATCAGAAAATAAAATTTATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47219328|emb|CAG10957.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47219328|emb|CAG10957.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               479-598, - strand, RNAz p=0.525391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-598, - strand, RNAz p=0.525391

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr13 (4898943-4899783)
               

               
               1-840, gnl|Hg17|chr8 (4632799-4633634)
               

               
               1-840, gnl|Mm7|chr18 (6233789-6232959)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr13 (4898943-4899783)
               

               
               1-840, gnl|Hg17|chr8 (4632799-4633634)
               

               
               1-840, gnl|Mm7|chr18 (6233789-6232959)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

	1-840, gnl\|bosTau2\|chr13 (4898943-4899783)
	1-840, gnl\|Hg17\|chr8 (4632799-4633634)
	1-840, gnl\|Mm7\|chr18 (6233789-6232959)