Non-Coding RNA Search

Ss1.1-Pig4-TMW8016E04.5

Sequence:


               
               AAACCCACATCCTTATGGGTACTAGTCAGGTTCCCTATTGCTGAGCCACAACAGGAACTC
CAAGAAGCACTCATTTTTAATGGTGGCCATAAATATGAACTTTGGGCAATAAGGTACTAT
TTCTTTAACCCGAGGCTTAGTAGACTACGTATGTATGTCCACGTATGTTTGAGCCCATCC
AGAATGCATTTTCCCAGCTCATGAGGGGCTGAAAGTAATTGTCTCATTCATCAGCCACTG
AGACATAGAGGGTTAAGTCCAGATTTGGTTGTGTTGAGATAACAGAGTATGAAATTAATA
AATGGCCTCCAGCAGGAAAACCTACACTGAAGCAAATCTGGAGAAGTGGGTGGTGGGGGA
GAAAGACAGGCATTATTAGTCTCTGCTTTTGTTTTTCAAGCATAATTTGATTTTCTTTTG
GCTCAGAAAACTTCTTTGGGGAAATTCCCTTTTCTTTTGTGTTCAGTTCAACCTAGGAAT
GTCCCCTTAAAAACCAACATTTAGGAAAATTCTCTTCTCAGGCTTGAGCGTATTAAAATT
TACCCAGACTTCGACATGAGTTGTCATTTTTCTTCATTATTTTGCTTTCTATTTTGGTTT
ATAGCTATTTCCTGTCTGATTCTGAACCTCAGTACTCAATTTACTATCTTTGTCCACAGG
TTTTTGGTGGCCTACCCCACTGTTGTTTTTTGATTTAAGGGTCTATAAGCCAAAATTTGG
ATGGGAGGGAGCCCTGACCATTTACATTAATTTGTAACAGTTGTGTGTGTTTTAACAAAA
TGTGTATTTATTCAGTATTTTTTCAGCATTATGTGGGCAAAATAAAAATAACCATGTATA
GTGAAAAGAAATAGAGTCCATATATTCCCAGGACATTATATTTACCAGTGTGTTGATAAA
TATAATTTAAAATTCAGAGATATTTCATTGGGTTTTTTAATGCAAAATAAATGATTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCCACATCCTTATGGGTACTAGTCAGGTTCCCTATTGCTGAGCCACAACAGGAACTC
CAAGAAGCACTCATTTTTAATGGTGGCCATAAATATGAACTTTGGGCAATAAGGTACTAT
TTCTTTAACCCGAGGCTTAGTAGACTACGTATGTATGTCCACGTATGTTTGAGCCCATCC
AGAATGCATTTTCCCAGCTCATGAGGGGCTGAAAGTAATTGTCTCATTCATCAGCCACTG
AGACATAGAGGGTTAAGTCCAGATTTGGTTGTGTTGAGATAACAGAGTATGAAATTAATA
AATGGCCTCCAGCAGGAAAACCTACACTGAAGCAAATCTGGAGAAGTGGGTGGTGGGGGA
GAAAGACAGGCATTATTAGTCTCTGCTTTTGTTTTTCAAGCATAATTTGATTTTCTTTTG
GCTCAGAAAACTTCTTTGGGGAAATTCCCTTTTCTTTTGTGTTCAGTTCAACCTAGGAAT
GTCCCCTTAAAAACCAACATTTAGGAAAATTCTCTTCTCAGGCTTGAGCGTATTAAAATT
TACCCAGACTTCGACATGAGTTGTCATTTTTCTTCATTATTTTGCTTTCTATTTTGGTTT
ATAGCTATTTCCTGTCTGATTCTGAACCTCAGTACTCAATTTACTATCTTTGTCCACAGG
TTTTTGGTGGCCTACCCCACTGTTGTTTTTTGATTTAAGGGTCTATAAGCCAAAATTTGG
ATGGGAGGGAGCCCTGACCATTTACATTAATTTGTAACAGTTGTGTGTGTTTTAACAAAA
TGTGTATTTATTCAGTATTTTTTCAGCATTATGTGGGCAAAATAAAAATAACCATGTATA
GTGAAAAGAAATAGAGTCCATATATTCCCAGGACATTATATTTACCAGTGTGTTGATAAA
TATAATTTAAAATTCAGAGATATTTCATTGGGTTTTTTAATGCAAAATAAATGATTGAAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               65-960, gnl|bosTau2|chr25 (15331342-15330458)
               

               
               65-960, gnl|Hg17|chr16 (13952825-13953683)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-960, gnl|bosTau2|chr25 (15331342-15330458)
               

               
               65-960, gnl|Hg17|chr16 (13952825-13953683)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               mga (0.32041)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               rec (0.17307)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	65-960, gnl\|bosTau2\|chr25 (15331342-15330458)
	65-960, gnl\|Hg17\|chr16 (13952825-13953683)

	mga (0.32041)
	rec (0.17307)
	liv (0.146284)
	lyg (0.133103)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	ebs (0.118301)
	spc (0.113366)