Ss1.1-Pig4-TMW8016E17.5
|
AGCCCCGCCAGGCAGGGCTGGGAAGGAGTGGGACTGATTCTGAGAGAGCCGCGGGGAGGA
GTCCTGGCTGGGCTGAGTGTGGGGAGCTGCTTGGCAGTGCCAGAGCCCAGGCCCCAGAGC
CTTGCAGGAGAGAAGGTGGACCGAGAAGGCAGGCCCCGCGAGGCGTGAGGCAGGGAGATG
GCAGACAGCTACACGGAGCTGGAGAAGGCGGTCATCGTCCTGGTGGAAAACTTCTACAAA
TATGTGTCCAAGCACAGCCTGGTCAAGAACAAGATCAGCAAGAGTAGCTTCCGGAAGATG
CTTCAGAAAGAGCTCAACCATATGCTGACGGACACGGGGAACCGAAAGGCTGCTGACAAG
CTTATCCAGAACCTGGATGCCAATCATGATGGGCGCATCAGCTTTGATGAGTACTGGACC
TTGATAGGGGGCATCACGAGCCCCATCGCCAACCTCATCCGCCAGCAGGAACAGCAAAGC
AGCAGCTAGAGGACCCCATCCCCCTGCCCCCACACCGTCCCCAACCCCAATGCTCTTCCT
AGGCTCCCTCCTCAGCCTCCTCTGCCCACCCAGGCCCCTGTCCTCTCTTCTCTCTCTAGA
CCTACTGACCTTGGCTGAACAGGGGCAGAGCAGGGATGTCAGGGTCCCTTTGTGAGTTTC
TCAGTCTGGGGGTGCCGCCTTGAGGGTCTCAGTCCCTGGAGCCAGCAGGCCCTGGTGCAC
CTCTGCAACAATGCTGTCTGGGGCCCCAAGCATTTTCCCACCTGTTCAGTCCAGCTGCCT
TTCTAACCTCAGATGTTCCTGCCTGATCCTGGGTACACAGGCTCTCTCTTGACCTTTTGA
GGTCAGCCTGCTTCTTCAGGTCTTCCTGCTCTCTGGGGAGCACCAGCAGAGACCTCTCCC
CTTTCCCTCGGCTCCTCTGCTGAGTATGGAGACTTCCTGAAACTGCCCTGCAGCTGCCTC
TGGGTCTGGGGACAGCTAAGTGGGGCTGAGTCTCCTCCCTCTTCCTCAGCCACTGAAATG
GGCAATAAAGGCTGGATTTGGTGTTTGTGTCCCCCTCACCCAGTCCCTTTGTCATGTTCA
TTAAAACCTTTCCACTTCTGGGCAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCCCGCCAGGCAGGGCTGGGAAGGAGTGGGACTGATTCTGAGAGAGCCGCGGGGAGGA
GTCCTGGCTGGGCTGAGTGTGGGGAGCTGCTTGGCAGTGCCAGAGCCCAGGCCCCAGAGC
CTTGCAGGAGAGAAGGTGGACCGAGAAGGCAGGCCCCGCGAGGCGTGAGGCAGGGAGATG
GCAGACAGCTACACGGAGCTGGAGAAGGCGGTCATCGTCCTGGTGGAAAACTTCTACAAA
TATGTGTCCAAGCACAGCCTGGTCAAGAACAAGATCAGCAAGAGTAGCTTCCGGAAGATG
CTTCAGAAAGAGCTCAACCATATGCTGACGGACACGGGGAACCGAAAGGCTGCTGACAAG
CTTATCCAGAACCTGGATGCCAATCATGATGGGCGCATCAGCTTTGATGAGTACTGGACC
TTGATAGGGGGCATCACGAGCCCCATCGCCAACCTCATCCGCCAGCAGGAACAGCAAAGC
AGCAGCTAGAGGACCCCATCCCCCTGCCCCCACACCGTCCCCAACCCCAATGCTCTTCCT
AGGCTCCCTCCTCAGCCTCCTCTGCCCACCCAGGCCCCTGTCCTCTCTTCTCTCTCTAGA
CCTACTGACCTTGGCTGAACAGGGGCAGAGCAGGGATGTCAGGGTCCCTTTGTGAGTTTC
TCAGTCTGGGGGTGCCGCCTTGAGGGTCTCAGTCCCTGGAGCCAGCAGGCCCTGGTGCAC
CTCTGCAACAATGCTGTCTGGGGCCCCAAGCATTTTCCCACCTGTTCAGTCCAGCTGCCT
TTCTAACCTCAGATGTTCCTGCCTGATCCTGGGTACACAGGCTCTCTCTTGACCTTTTGA
GGTCAGCCTGCTTCTTCAGGTCTTCCTGCTCTCTGGGGAGCACCAGCAGAGACCTCTCCC
CTTTCCCTCGGCTCCTCTGCTGAGTATGGAGACTTCCTGAAACTGCCCTGCAGCTGCCTC
TGGGTCTGGGGACAGCTAAGTGGGGCTGAGTCTCCTCCCTCTTCCTCAGCCACTGAAATG
GGCAATAAAGGCTGGATTTGGTGTTTGTGTCCCCCTCACCCAGTCCCTTTGTCATGTTCA
TTAAAACCTTTCCACTTCTGGGCAAAAAAAAAAAAA
|
|
gi|57089641|ref|XP_547580.1| |
Protein identifier
|
gi|57089641|ref|XP_547580.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-153, gnl|bosTau2|chr3 (11173511-11173663) |
|
1-153, gnl|Hg17|chr1 (150398651-150398500) |
|
1-153, gnl|Mm7|chr3 (90669096-90669249) |
| |
|
330-1102, gnl|bosTau2|chr3 (11179690-11180443) |
|
330-1102, gnl|canFam2|chr7 (46429793-46429285) |
|
330-1102, gnl|hg17|chr1 (150392365-150393002) |
|
330-1102, gnl|Hg17|chr1 (150393242-150392438) |
|
330-1102, gnl|mm7|chr3 (90673932-90673329) |
|
330-1102, gnl|monDom2|scaffold_59 (4489359-4488800) |
|
330-1102, gnl|panTro1|chr1 (132375082-132375748) |
|
330-1102, gnl|rn3|chr2 (182763506-182762883) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-153, gnl|bosTau2|chr3 (11173511-11173663) |
|
1-153, gnl|Hg17|chr1 (150398651-150398500) |
|
1-153, gnl|Mm7|chr3 (90669096-90669249) |
| |
|
330-1102, gnl|bosTau2|chr3 (11179690-11180443) |
|
330-1102, gnl|canFam2|chr7 (46429793-46429285) |
|
330-1102, gnl|hg17|chr1 (150392365-150393002) |
|
330-1102, gnl|Hg17|chr1 (150393242-150392438) |
|
330-1102, gnl|mm7|chr3 (90673932-90673329) |
|
330-1102, gnl|monDom2|scaffold_59 (4489359-4488800) |
|
330-1102, gnl|panTro1|chr1 (132375082-132375748) |
|
330-1102, gnl|rn3|chr2 (182763506-182762883) |
|
ton (1.5795) |
|
hyp (0.85702) |
|
eep (0.735384) |
|
nlu (0.575043) |
|
fhi (0.508733) |
|
amn (0.417711) |
|
cov (0.396458) |
|
col (0.390016) |
|
elu (0.385356) |
|
cly (0.361925) |
|
nco (0.323468) |
|
eje (0.296501) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
pla (0.267344) |
|
eru (0.240096) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
pty (0.142714) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
ton (1.5795) |
|
hyp (0.85702) |
|
eep (0.735384) |
|
nlu (0.575043) |
|
fhi (0.508733) |
|
amn (0.417711) |
|
cov (0.396458) |
|
col (0.390016) |
|
elu (0.385356) |
|
cly (0.361925) |
|
nco (0.323468) |
|
eje (0.296501) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
pla (0.267344) |
|
eru (0.240096) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
nje (0.16592) |
|
pty (0.142714) |
|
cst (0.140036) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
