Non-Coding RNA Search

Ss1.1-Pig4-TMW8016E20.5

Sequence:


               
               CCAGAAACAGGATGGTGGGACAGCAACAGCTGCTGTCTTTGGTAACACAGATGAAGGTGG
ATTTTTAAACGGCTTTGTATCTTGACCCCTTTCTACAATAACGGAGTAGCATCTGCTGCA
TCCATATAAATTACAGAGTGAAACTAGAAGGGGTAAAAGTTTGACTAAACTCCACCTTTT
CCAGCTCAAGATCACTCAGCGTCTTCGTTTGGACCAGCCCAAGTTGGATGAAGTCACTCG
TGCTTTTTTTTTCTGAATTTTTTTGACGTGTTTTACTCAGTTACATGAGTACAAAGGATA
TTTTCAGTCCTGTAATTCTCACTTCAATTGCAGTCTTTAAAAAAAAAAAAATCCACCCTA
TTGTTCTACTTGTTGTCTATTCATACAGTAAATTCATTTCAAGGTTTGTGCCAGTGGGTA
TTATTGGTGCTTTTTGAAGTCAAGGTGGACTATCCAGGAAGGTCTTGTTAATGTATGTTC
ATCTATAATGGCATAGGGGAAATAGATATATTTTTAATATTGTAAACATTTGTACTGAAT
AACCTTTTTTTCCCCCCTGCAAGCAAAACTGGTGAACAACGGATGAAGATGTGGAATTCA
AAGCTCTAATGGACCTTTTTGAAGAGAAGTTGTGGCTTATGTGGAGTTTACATGGGCCTC
TTGATGGAAGAAAGCTAATCTGTTTAGTATTTGTGCATTTTACTAAAATGGCAGCTTAAA
GTTGTGTATCTGCTATTGTGATGCCAATGCCGGTGTTTTAAGTGGAAAAAAAAATGACCT
TGCTTTGTGCTGTGTACACAAGATTTCTGGAAAAGTAAAGAAAAACCCTTTTTATGGCTC
ACACAGCTTAAAAGTAGCTGTCACTCAAACATGCGCTCACAGTTGAGCTGCTTTTGTTTT
ATTCTAAATAAATTGTTTCTTTTGAGGAAAATGTTTTTCTGCCTGGAAGTGAATTGACGG
CAAACCTTTGACCCCTTTGTTTGCAGCTGAGGGGGTTCTTGCTGCTGCTCAGATCTTGTC
TGTCTTGAGCAAGAAGCAGGGAGACCATCGTGTTGACTATCACAGTGTGTCGATTCTGAA
GGATCACTAGTGTTACTGTGACCCCCCTTTGTTTGCAGTGAAGGGGATCATTTGCTTCTC
AGTCCTCAACTTGATGAGGAAATGGTGCTGTTTGCTGGCACACAAGAAGCCGGGGCAAGC
ACCGTAAGCCTCACCACAGTGCACGAGTCGGGGGCTTTGCTGGTTTGAAGAGCCGGAGTT
GCTGAAATTTAAGTTTTGATTTATTTTGTTCACCCATCACGTTTGGCCTTAGTTTCATTT
TTAATTTGAAGAAAAGTGTGAAATTGCTTTATCTTGCACTTAACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAAACAGGATGGTGGGACAGCAACAGCTGCTGTCTTTGGTAACACAGATGAAGGTGG
ATTTTTAAACGGCTTTGTATCTTGACCCCTTTCTACAATAACGGAGTAGCATCTGCTGCA
TCCATATAAATTACAGAGTGAAACTAGAAGGGGTAAAAGTTTGACTAAACTCCACCTTTT
CCAGCTCAAGATCACTCAGCGTCTTCGTTTGGACCAGCCCAAGTTGGATGAAGTCACTCG
TGCTTTTTTTTTCTGAATTTTTTTGACGTGTTTTACTCAGTTACATGAGTACAAAGGATA
TTTTCAGTCCTGTAATTCTCACTTCAATTGCAGTCTTTAAAAAAAAAAAAATCCACCCTA
TTGTTCTACTTGTTGTCTATTCATACAGTAAATTCATTTCAAGGTTTGTGCCAGTGGGTA
TTATTGGTGCTTTTTGAAGTCAAGGTGGACTATCCAGGAAGGTCTTGTTAATGTATGTTC
ATCTATAATGGCATAGGGGAAATAGATATATTTTTAATATTGTAAACATTTGTACTGAAT
AACCTTTTTTTCCCCCCTGCAAGCAAAACTGGTGAACAACGGATGAAGATGTGGAATTCA
AAGCTCTAATGGACCTTTTTGAAGAGAAGTTGTGGCTTATGTGGAGTTTACATGGGCCTC
TTGATGGAAGAAAGCTAATCTGTTTAGTATTTGTGCATTTTACTAAAATGGCAGCTTAAA
GTTGTGTATCTGCTATTGTGATGCCAATGCCGGTGTTTTAAGTGGAAAAAAAAATGACCT
TGCTTTGTGCTGTGTACACAAGATTTCTGGAAAAGTAAAGAAAAACCCTTTTTATGGCTC
ACACAGCTTAAAAGTAGCTGTCACTCAAACATGCGCTCACAGTTGAGCTGCTTTTGTTTT
ATTCTAAATAAATTGTTTCTTTTGAGGAAAATGTTTTTCTGCCTGGAAGTGAATTGACGG
CAAACCTTTGACCCCTTTGTTTGCAGCTGAGGGGGTTCTTGCTGCTGCTCAGATCTTGTC
TGTCTTGAGCAAGAAGCAGGGAGACCATCGTGTTGACTATCACAGTGTGTCGATTCTGAA
GGATCACTAGTGTTACTGTGACCCCCCTTTGTTTGCAGTGAAGGGGATCATTTGCTTCTC
AGTCCTCAACTTGATGAGGAAATGGTGCTGTTTGCTGGCACACAAGAAGCCGGGGCAAGC
ACCGTAAGCCTCACCACAGTGCACGAGTCGGGGGCTTTGCTGGTTTGAAGAGCCGGAGTT
GCTGAAATTTAAGTTTTGATTTATTTTGTTCACCCATCACGTTTGGCCTTAGTTTCATTT
TTAATTTGAAGAAAAGTGTGAAATTGCTTTATCTTGCACTTAACATTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               101-218, + strand, RNAz p=0.578591
               

               
               755-1145, - strand, RNAz p=0.841619

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-218, + strand, RNAz p=0.578591
               

               
               755-1145, - strand, RNAz p=0.841619

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-1368, gnl|bosTau2|chr3 (29662528-29663842)
               

               
               25-1368, gnl|Hg17|chr1 (110600443-110601785)
               

               
               25-1368, gnl|Mm7|chr3 (107145139-107143791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-1368, gnl|bosTau2|chr3 (29662528-29663842)
               

               
               25-1368, gnl|Hg17|chr1 (110600443-110601785)
               

               
               25-1368, gnl|Mm7|chr3 (107145139-107143791)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               amn (0.417711)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ese (0.253004)
               

               
               cbl (0.229595)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	101-218, + strand, RNAz p=0.578591
	755-1145, - strand, RNAz p=0.841619

	25-1368, gnl\|bosTau2\|chr3 (29662528-29663842)
	25-1368, gnl\|Hg17\|chr1 (110600443-110601785)
	25-1368, gnl\|Mm7\|chr3 (107145139-107143791)

	amn (0.417711)
	ese (0.253004)
	cbl (0.229595)
	fcc (0.197785)
	sin (0.174948)
	eye (0.170503)
	cje (0.165235)
	lun (0.150489)
	lnt (0.142308)
	sug (0.127291)
	ldo (0.0970026)