Non-Coding RNA Search

Ss1.1-Pig4-TMW8016E21.3

Sequence:


               
               TTCCTAAACACCCCTCCTCCAGGCACACAACCTCTTCGAGCTGTTGAACCTTCAGTCCCT
CTTCGTGACATCTCGGGGCCGAGCTGTGGGCTTCGTGTCTTGGGTGGAGGTACCAGGGTC
TCGAGGGTGGAGCAAAGGGGAGGAGCCATGCTCAAGCAGGCTGGGGAGGTGGGGGGCACT
GATATCCTCCCATCCAAAACTGGAGGGGCCTCGTGGGATTCTGATGAGCCCTATTTCCTG
GCCCAGGGTGGTCAGCCACTGGGCCCAATTATCCCTACCTTATTTTGTGGCTAGTGGCCG
GCACTACCCTTCTCTGGGCCTCAGTGTTCCCATTTGTGCAATAGGGAGGCACCAGCTCTA
AAATTCACTCCAGAATCAACCCTTAGGGGAGTCAAACTCCCCTGGAGCCTTCACTTTCAC
TCTTTTCTACATCTCTGTCCAGATAATCCCTCTTTCTCTGTTCTAGTTGGAGAAAGTGAT
TTCCAGCCTAACAAACCCTCCGGCCCCAAAGTAAGCTGGCCTGGCAAGATGATATGGGAC
CCCCCGCTGCCCTGGTGAAGGAGACTGGGCAGAGACCCTTGCCTCTCTCCCTGCATCACA
ACACCCCGCCCCATCCCAGCCCTGCTCAACTCCCTGGCGAAGCAGGCAGCTGACCCAGCA
CTGAAGAGGGCCCCGTAGTCACCGTGTCCCATCTTTGCTGGGACAAGTGCTACATGCCTT
GAAGAGCATATCCCACCCTGGACAGAGCTCAGAATGCAAGACAGCGGAAAACCAGTACAT
GCTGGGTGTTCAAGGCAAGTTCCTCAGATTCATGAATGCAGAGATTGGTATATGCTGTCG
CCAAGGGCAGGCACAGGTGCTCTATGGGGCTTGTATGACTCCCAACCAGAGGCTCCTGAG
GAAAAAAAGAATAAAGTTGATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTAAACACCCCTCCTCCAGGCACACAACCTCTTCGAGCTGTTGAACCTTCAGTCCCT
CTTCGTGACATCTCGGGGCCGAGCTGTGGGCTTCGTGTCTTGGGTGGAGGTACCAGGGTC
TCGAGGGTGGAGCAAAGGGGAGGAGCCATGCTCAAGCAGGCTGGGGAGGTGGGGGGCACT
GATATCCTCCCATCCAAAACTGGAGGGGCCTCGTGGGATTCTGATGAGCCCTATTTCCTG
GCCCAGGGTGGTCAGCCACTGGGCCCAATTATCCCTACCTTATTTTGTGGCTAGTGGCCG
GCACTACCCTTCTCTGGGCCTCAGTGTTCCCATTTGTGCAATAGGGAGGCACCAGCTCTA
AAATTCACTCCAGAATCAACCCTTAGGGGAGTCAAACTCCCCTGGAGCCTTCACTTTCAC
TCTTTTCTACATCTCTGTCCAGATAATCCCTCTTTCTCTGTTCTAGTTGGAGAAAGTGAT
TTCCAGCCTAACAAACCCTCCGGCCCCAAAGTAAGCTGGCCTGGCAAGATGATATGGGAC
CCCCCGCTGCCCTGGTGAAGGAGACTGGGCAGAGACCCTTGCCTCTCTCCCTGCATCACA
ACACCCCGCCCCATCCCAGCCCTGCTCAACTCCCTGGCGAAGCAGGCAGCTGACCCAGCA
CTGAAGAGGGCCCCGTAGTCACCGTGTCCCATCTTTGCTGGGACAAGTGCTACATGCCTT
GAAGAGCATATCCCACCCTGGACAGAGCTCAGAATGCAAGACAGCGGAAAACCAGTACAT
GCTGGGTGTTCAAGGCAAGTTCCTCAGATTCATGAATGCAGAGATTGGTATATGCTGTCG
CCAAGGGCAGGCACAGGTGCTCTATGGGGCTTGTATGACTCCCAACCAGAGGCTCCTGAG
GAAAAAAAGAATAAAGTTGATTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               255-492, - strand, RNAz p=0.99988
               

               
               651-768, - strand, RNAz p=0.945512

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-492, - strand, RNAz p=0.99988
               

               
               651-768, - strand, RNAz p=0.945512

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-230, gnl|bosTau2|chr2 (86224615-86224392)
               

               
               1-230, gnl|Hg17|chr1 (16128202-16128444)
               

               
               1-230, gnl|Mm7|chr4 (140763825-140763640)
               


               
               255-908, gnl|bosTau2|chr2 (86224390-86223757)
               

               
               255-908, gnl|Hg17|chr1 (16128465-16129095)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr2 (86224615-86224392)
               

               
               1-230, gnl|Hg17|chr1 (16128202-16128444)
               

               
               1-230, gnl|Mm7|chr4 (140763825-140763640)
               


               
               255-908, gnl|bosTau2|chr2 (86224390-86223757)
               

               
               255-908, gnl|Hg17|chr1 (16128465-16129095)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	255-492, - strand, RNAz p=0.99988
	651-768, - strand, RNAz p=0.945512

	1-230, gnl\|bosTau2\|chr2 (86224615-86224392)
	1-230, gnl\|Hg17\|chr1 (16128202-16128444)
	1-230, gnl\|Mm7\|chr4 (140763825-140763640)

	255-908, gnl\|bosTau2\|chr2 (86224390-86223757)
	255-908, gnl\|Hg17\|chr1 (16128465-16129095)