Non-Coding RNA Search

Ss1.1-Pig4-TMW8016F09.5

Sequence:


               
               GTAGGTTTCAGCTCAATGTATAGAATAGTCCAAAGAGACTCTGAGAAACATGATGATAGG
CAGGGATCTTTCCTTCCATGTTTCAATACCTACATAACCTATTGAAAGAGAGCAATAGGT
AAAACAGTTCCTAAAGTTGAAATAAGAGCTTCATAGATTCTTGGTTACTTTATTTTTTTT
AATGCTTTACATTTGATACAACTATTAAAGATCAATTTAAAAATAGCTTTCCAGTAATAT
ATTTTAAGTAATATATATTTTAATATCTATGTAAAAAGACGACAGTGGAAGACTTTGAAT
TTCTCATATATGGTATGTTTAATGTAGGACCTCACTGTTAAGGCACAAATTATTTCAAAG
GAAGTTACTCTAAAGACACTCAGATTATTTCCAAAACAACAACAAAAAAAATGCAATAAG
GGGGATAGTTTTGGAGTTTATTTTTTATTTTAAGAGAAAATTGACTTATTTACTGCAAGC
TATTTTCTTCCCTTCTGGCTGTAAGGTTTGTACAGACGGGTTTGGTAAATGCTAAACTTT
TGTGTCTTTGCCTTTTTAAAGGAATTGTTAACATTGGGATTGAGGGTATGTACAGAGAAG
TTGGTGTCAACACCATTTAAAAAGTCATATTTTTTCACAAATATAGAAAATCATTTTACA
TAAGAATTTTAAGTATTTGCAATAAATATATGTATATAGATTGTATGTATTCATATATTC
TTATTTTTCATTTTATTATTAAGTAAAAGATAATTAAAGTGAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGTTTCAGCTCAATGTATAGAATAGTCCAAAGAGACTCTGAGAAACATGATGATAGG
CAGGGATCTTTCCTTCCATGTTTCAATACCTACATAACCTATTGAAAGAGAGCAATAGGT
AAAACAGTTCCTAAAGTTGAAATAAGAGCTTCATAGATTCTTGGTTACTTTATTTTTTTT
AATGCTTTACATTTGATACAACTATTAAAGATCAATTTAAAAATAGCTTTCCAGTAATAT
ATTTTAAGTAATATATATTTTAATATCTATGTAAAAAGACGACAGTGGAAGACTTTGAAT
TTCTCATATATGGTATGTTTAATGTAGGACCTCACTGTTAAGGCACAAATTATTTCAAAG
GAAGTTACTCTAAAGACACTCAGATTATTTCCAAAACAACAACAAAAAAAATGCAATAAG
GGGGATAGTTTTGGAGTTTATTTTTTATTTTAAGAGAAAATTGACTTATTTACTGCAAGC
TATTTTCTTCCCTTCTGGCTGTAAGGTTTGTACAGACGGGTTTGGTAAATGCTAAACTTT
TGTGTCTTTGCCTTTTTAAAGGAATTGTTAACATTGGGATTGAGGGTATGTACAGAGAAG
TTGGTGTCAACACCATTTAAAAAGTCATATTTTTTCACAAATATAGAAAATCATTTTACA
TAAGAATTTTAAGTATTTGCAATAAATATATGTATATAGATTGTATGTATTCATATATTC
TTATTTTTCATTTTATTATTAAGTAAAAGATAATTAAAGTGAAAATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-155, + strand, RNAz p=0.980181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, + strand, RNAz p=0.980181

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-766, gnl|bosTau2|chr11 (54372584-54371830)
               

               
               1-766, gnl|Hg17|chr2 (25872958-25872207)
               

               
               1-766, gnl|Mm7|chr12 (3424573-3425317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-766, gnl|bosTau2|chr11 (54372584-54371830)
               

               
               1-766, gnl|Hg17|chr2 (25872958-25872207)
               

               
               1-766, gnl|Mm7|chr12 (3424573-3425317)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-766, gnl\|bosTau2\|chr11 (54372584-54371830)
	1-766, gnl\|Hg17\|chr2 (25872958-25872207)
	1-766, gnl\|Mm7\|chr12 (3424573-3425317)

	vin (0.332557)
	sme (0.305437)
	ret (0.257467)
	aor (0.195274)
	lin (0.145603)
	tra (0.123092)
	ldo (0.0970026)