Ss1.1-Pig4-TMW8016F12.5
|
TCTTAATTCTAAGCTGTCGTAAAAGGCACATATACTTCTGCATGTAAGAGCAAAATGAAT
TCAGGTTGTCCTGCTGCTAATTTCATGATTACAGGATGAACTTATTTTCAACCCTTTAGT
TTCTAAAATATTTAAAGACCAAGTAGCTACTCCTTCAACAATATTTATCAGTGGATCGAG
AACTGAAGTTTAAGATTTTGCAGATTTATCTATTGGTTCTTGTATTGGGGTTGTCCTGAA
GCTTTATAAGTGTCCCTCTGTATTTAGATTTACACATTTTAAACACTAATGTTAAAGTGA
TTGATAAGCATGGACATATGTTAAATGTCCTTTTCTGGTTGCCTGTCTGCTCTGTTGTTT
TCATATATTTACACCACACAGTTAAGCAGAGTCGGGTATCATTAGTGTGCTGAGTTTGGC
ATAGATAATGCAGTTACTTAACCTGTGCCTATCAAAGCTTCATGATATTAGACTATTACC
ACAAATAACTTGAGATGAAGCTAATTCAGATATATTAAAATTTTTGAAATCATCACTGTT
ACCTGTTGTAGAAAATAGTACCAGCTTAGTCTAGTCTGTATGTAACTGGTTCAAGTTTGA
TGGCTTGTTCTATACTCAGTAGGTATGTATATAAAAATTAGAACATACATATCTATCTAG
ACATGAATATTAAGTTAGAACTTTTATCCTCCTCCTCATATATAATTTGTAGCTCATCTT
TTTTCTTCAATCCTTTCATAACTTGTTGCAACAGTTTGAATTTCCCAGATATTTATGTTT
GAACATAATGGCTCAGAATACATATTTAAACATCACTAGCTGTATATATTTTTTTAAGTA
GAATAAATAATGGAAAGGGACTTGACATACAAGTTATACTAAAATTCCAACTGTGTGAAG
ATACTTTTTAAGATATTTGCTAATAATCTAAACATTGTTTTTGTTTTATTAAAGAAACAA
ATGGCTTGGGGTTCACAACTTCATCTGGCTTGATAAGAATCTTTGGAAACACATTGGACT
GAAATTAAATTTTATTCTTTGAAAGAGTTCATTTAAATTTCTGTACTATCCATTTTTGCT
TTAATTTGTACATGTGTAACATTTCTGTTTATATAGGACAAAAGAGATCCTATGACTTGT
TTTCAAAAATTAAATTGATACATAAATTATATAAATATAATTCAAAGGGGTTTTCATTTA
CTTTTCAAAAGAAAAAAATTTCTCTAAATTAAACATGTTGATTCTGCAGGGTTGTACTAA
TCAATTCTTGTAGAATAAAAAAAAGTCTTTCCGCAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCTTAATTCTAAGCTGTCGTAAAAGGCACATATACTTCTGCATGTAAGAGCAAAATGAAT
TCAGGTTGTCCTGCTGCTAATTTCATGATTACAGGATGAACTTATTTTCAACCCTTTAGT
TTCTAAAATATTTAAAGACCAAGTAGCTACTCCTTCAACAATATTTATCAGTGGATCGAG
AACTGAAGTTTAAGATTTTGCAGATTTATCTATTGGTTCTTGTATTGGGGTTGTCCTGAA
GCTTTATAAGTGTCCCTCTGTATTTAGATTTACACATTTTAAACACTAATGTTAAAGTGA
TTGATAAGCATGGACATATGTTAAATGTCCTTTTCTGGTTGCCTGTCTGCTCTGTTGTTT
TCATATATTTACACCACACAGTTAAGCAGAGTCGGGTATCATTAGTGTGCTGAGTTTGGC
ATAGATAATGCAGTTACTTAACCTGTGCCTATCAAAGCTTCATGATATTAGACTATTACC
ACAAATAACTTGAGATGAAGCTAATTCAGATATATTAAAATTTTTGAAATCATCACTGTT
ACCTGTTGTAGAAAATAGTACCAGCTTAGTCTAGTCTGTATGTAACTGGTTCAAGTTTGA
TGGCTTGTTCTATACTCAGTAGGTATGTATATAAAAATTAGAACATACATATCTATCTAG
ACATGAATATTAAGTTAGAACTTTTATCCTCCTCCTCATATATAATTTGTAGCTCATCTT
TTTTCTTCAATCCTTTCATAACTTGTTGCAACAGTTTGAATTTCCCAGATATTTATGTTT
GAACATAATGGCTCAGAATACATATTTAAACATCACTAGCTGTATATATTTTTTTAAGTA
GAATAAATAATGGAAAGGGACTTGACATACAAGTTATACTAAAATTCCAACTGTGTGAAG
ATACTTTTTAAGATATTTGCTAATAATCTAAACATTGTTTTTGTTTTATTAAAGAAACAA
ATGGCTTGGGGTTCACAACTTCATCTGGCTTGATAAGAATCTTTGGAAACACATTGGACT
GAAATTAAATTTTATTCTTTGAAAGAGTTCATTTAAATTTCTGTACTATCCATTTTTGCT
TTAATTTGTACATGTGTAACATTTCTGTTTATATAGGACAAAAGAGATCCTATGACTTGT
TTTCAAAAATTAAATTGATACATAAATTATATAAATATAATTCAAAGGGGTTTTCATTTA
CTTTTCAAAAGAAAAAAATTTCTCTAAATTAAACATGTTGATTCTGCAGGGTTGTACTAA
TCAATTCTTGTAGAATAAAAAAAAGTCTTTCCGCAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
fco (0.628832) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
kid (0.389206) |
|
sin (0.349895) |
|
vin (0.332557) |
|
nca (0.273748) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
tra (0.123092) |
|
eru (0.120048) |
|
fco (0.628832) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
kid (0.389206) |
|
sin (0.349895) |
|
vin (0.332557) |
|
nca (0.273748) |
|
gul (0.177588) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
lin (0.145603) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
tra (0.123092) |
|
eru (0.120048) |