Non-Coding RNA Search

Ss1.1-Pig4-TMW8016F13.5

Sequence:


               
               GCACCTTGAAATTTATTTTCAAGACCAAGAACAAAAAGCGAAGCATTTCAAGAAATGGAA
GCAGTGGGAATCCAAATCAAGTGGGGAAAAAAGTTCCAACTACTCTGTAAAAGATATTCC
TCACAGTTTAGCAATAATTGATTAAATAAAATCATACCAATTTACATTAGTTTTCTATTC
TTTCCGAAAATCCCTCTCAAAAAAAAGTGCATCCAAAACCCAGCAATTCCCGGCTTCATT
AACTTTTCTCATCCCTTTCGAGTTATTTCTCAAAGATTTTCCAAGTAGATTCAACTTCTT
ACTGTAAGGAAAGAAGGGACTTCTACAGTAAAACACTCTATCACTCACCTGGAAAAAGTA
TCCAAATTATAAAAATCTGAAATAATTTATTATCAAATTTAGAATTTAAATAAAAATAAG
AGTTTGCTTGCAAAGGCCTTAAAGAAAAGGAAAAGATAGCATGCATTAAAAAACCAGAGA
TGGAGACAAATATACTTATCTACACAGGCACTGGCAGACGCAATTTAATTGTTATCTTTT
ACTCTTTGTAAGATACACCCAAGCCTACATAACAATTTTTCATTCACTAATCACTGAGGT
ACCAATATTCAAGAATGGAAAATTTAATATTGAAAAAATAAAACCTAAAATTGAAGCTTT
TCCCCCACCCCCTTCAGAAAACTATGGCAGGTTTCATGTAAAATGTTAGTATACTCAGAG
ATTTTTACCATCTACATTGGCTTTTTTAAGGAACAAAAATCATGTTCCACTTACTGGTTC
TGTGATGAAATTATCACTGTGTAAATAACATTGTCACCAGACTTTGCAAATGAACAAATA
AATCTTGGCTATCAACTGGCACATCTTGTTGGTACCAAAAGAACTCCTTAAGTTTAAAAC
GACCTCTTTTAATTCAGAACAAATGCGCCATGCCAAAGTGCAACAAATATTGTGCGACAC
TCAAATGAGACACTGACAGATAAGAGCTGCATGGAAATTACTAAATCCACCTGCAAAGCA
ATTCTGTACAAATTGCATTGCATGCAAAAGTCGTTTCTGCATGGTTGGAAAGTTGTTCCT
TGATGTCAGTTTCTCAACGCAGCCATAATTTAAGCCGCAGTGCATCAACTCCATTTAAAT
AGTATCTGAACAGCCTCTTATCTCGAACAAAACCAAGATTTTCATAAAGTTTCAAAGCAG
ACTTATTCGTTATTTCCGTTTCCAAAACAACCTCATCACAGTCTCCTTCAACCATGGCAT
ATATAGCTTTCTTAACCAAGTTAGTACCAATGCCATTTCTCCTGTATTTGGAATCCACGG
CTAACATGGCTATATAACCTCTGCGGAACATCTTTTTGTGCATATCCAACTTGCAAACGA
TGGCACCTACACACTCCTCCCCTACACTTACCAAGAAGCACAGCTGTGGCCAGTTGTGAA
TAAAATATCTATAGGTATAAATGGAGTAGGGTTCAGACAGATCTTTGGTGATCAGTCTCA
TGATATCGGGCATTTGTAGCTCGGATTCATATCGGACATAACGTATCGTCCGATCCTCCC
CAGGCTCAACCTCCCTGCCTGAGGGGCTTCTTATACTGCAGCCGGCGGTCAGGGATGAAG
ACAGCAGCCGCACCTGCTCGTCCTCCTCCTCCTCCTGCTCGGTGCCCTCCGCCAGTCCAT
TGCGGGCCGCCGCGGGATCGCTCGCCGCCGCCGCTGCCTCTGCCGGGCTGGGGAGCGCAG
TTCTCGCATTATTGGGGAGGCAATGAGGGGGGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTTGAAATTTATTTTCAAGACCAAGAACAAAAAGCGAAGCATTTCAAGAAATGGAA
GCAGTGGGAATCCAAATCAAGTGGGGAAAAAAGTTCCAACTACTCTGTAAAAGATATTCC
TCACAGTTTAGCAATAATTGATTAAATAAAATCATACCAATTTACATTAGTTTTCTATTC
TTTCCGAAAATCCCTCTCAAAAAAAAGTGCATCCAAAACCCAGCAATTCCCGGCTTCATT
AACTTTTCTCATCCCTTTCGAGTTATTTCTCAAAGATTTTCCAAGTAGATTCAACTTCTT
ACTGTAAGGAAAGAAGGGACTTCTACAGTAAAACACTCTATCACTCACCTGGAAAAAGTA
TCCAAATTATAAAAATCTGAAATAATTTATTATCAAATTTAGAATTTAAATAAAAATAAG
AGTTTGCTTGCAAAGGCCTTAAAGAAAAGGAAAAGATAGCATGCATTAAAAAACCAGAGA
TGGAGACAAATATACTTATCTACACAGGCACTGGCAGACGCAATTTAATTGTTATCTTTT
ACTCTTTGTAAGATACACCCAAGCCTACATAACAATTTTTCATTCACTAATCACTGAGGT
ACCAATATTCAAGAATGGAAAATTTAATATTGAAAAAATAAAACCTAAAATTGAAGCTTT
TCCCCCACCCCCTTCAGAAAACTATGGCAGGTTTCATGTAAAATGTTAGTATACTCAGAG
ATTTTTACCATCTACATTGGCTTTTTTAAGGAACAAAAATCATGTTCCACTTACTGGTTC
TGTGATGAAATTATCACTGTGTAAATAACATTGTCACCAGACTTTGCAAATGAACAAATA
AATCTTGGCTATCAACTGGCACATCTTGTTGGTACCAAAAGAACTCCTTAAGTTTAAAAC
GACCTCTTTTAATTCAGAACAAATGCGCCATGCCAAAGTGCAACAAATATTGTGCGACAC
TCAAATGAGACACTGACAGATAAGAGCTGCATGGAAATTACTAAATCCACCTGCAAAGCA
ATTCTGTACAAATTGCATTGCATGCAAAAGTCGTTTCTGCATGGTTGGAAAGTTGTTCCT
TGATGTCAGTTTCTCAACGCAGCCATAATTTAAGCCGCAGTGCATCAACTCCATTTAAAT
AGTATCTGAACAGCCTCTTATCTCGAACAAAACCAAGATTTTCATAAAGTTTCAAAGCAG
ACTTATTCGTTATTTCCGTTTCCAAAACAACCTCATCACAGTCTCCTTCAACCATGGCAT
ATATAGCTTTCTTAACCAAGTTAGTACCAATGCCATTTCTCCTGTATTTGGAATCCACGG
CTAACATGGCTATATAACCTCTGCGGAACATCTTTTTGTGCATATCCAACTTGCAAACGA
TGGCACCTACACACTCCTCCCCTACACTTACCAAGAAGCACAGCTGTGGCCAGTTGTGAA
TAAAATATCTATAGGTATAAATGGAGTAGGGTTCAGACAGATCTTTGGTGATCAGTCTCA
TGATATCGGGCATTTGTAGCTCGGATTCATATCGGACATAACGTATCGTCCGATCCTCCC
CAGGCTCAACCTCCCTGCCTGAGGGGCTTCTTATACTGCAGCCGGCGGTCAGGGATGAAG
ACAGCAGCCGCACCTGCTCGTCCTCCTCCTCCTCCTGCTCGGTGCCCTCCGCCAGTCCAT
TGCGGGCCGCCGCGGGATCGCTCGCCGCCGCCGCTGCCTCTGCCGGGCTGGGGAGCGCAG
TTCTCGCATTATTGGGGAGGCAATGAGGGGGGCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26381435|dbj|BAC25468.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26381435|dbj|BAC25468.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               812-1091, - strand, RNAz p=0.914059
               

               
               1434-1667, - strand, RNAz p=0.966726

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               812-1091, - strand, RNAz p=0.914059
               

               
               1434-1667, - strand, RNAz p=0.966726

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1233, gnl|bosTau2|chr10 (46342367-46343589)
               

               
               1-1233, gnl|Hg17|chr14 (56947073-56945848)
               

               
               1-1233, gnl|Mm7|chr14 (44521186-44519964)
               


               
               1395-1776, gnl|bosTau2|chr10 (46361038-46361416)
               

               
               1395-1776, gnl|Hg17|chr14 (56928216-56927835)
               

               
               1395-1776, gnl|Mm7|chr14 (44505825-44505426)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1233, gnl|bosTau2|chr10 (46342367-46343589)
               

               
               1-1233, gnl|Hg17|chr14 (56947073-56945848)
               

               
               1-1233, gnl|Mm7|chr14 (44521186-44519964)
               


               
               1395-1776, gnl|bosTau2|chr10 (46361038-46361416)
               

               
               1395-1776, gnl|Hg17|chr14 (56928216-56927835)
               

               
               1395-1776, gnl|Mm7|chr14 (44505825-44505426)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cte (0.29274)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	812-1091, - strand, RNAz p=0.914059
	1434-1667, - strand, RNAz p=0.966726

	1-1233, gnl\|bosTau2\|chr10 (46342367-46343589)
	1-1233, gnl\|Hg17\|chr14 (56947073-56945848)
	1-1233, gnl\|Mm7\|chr14 (44521186-44519964)

	1395-1776, gnl\|bosTau2\|chr10 (46361038-46361416)
	1395-1776, gnl\|Hg17\|chr14 (56928216-56927835)
	1395-1776, gnl\|Mm7\|chr14 (44505825-44505426)

	cte (0.29274)
	ece (0.229305)
	tes (0.207814)
	liv (0.146284)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	ldo (0.0970026)