Non-Coding RNA Search

Ss1.1-Pig4-TMW8016F22.5

Sequence:


               
               CTTCGCCGTCGCCACGCCGTCCGCTCTCCGGCGAGTCATGGTGGCTGCACTCGTGGCGGC
GTGGCTGCTCCTGGCGGCGGCGGCCCGCGCGCAGCGGGAGCAGGACTTCTACGACTTCAA
GGCGGTCAACATCCGGGGCAAGTTGGTGTCGCTGGAGAAGTACCGCGGCTCGGTGTCCCT
TGTGGTGAATGTGGCTAGCGAGTGTGGCTTCACAGACCAGCACTACCGCGCCCTGCAGCA
GCTGCAGAGGGACCTGGGGCCCCACCACTTCAACGTGCTCGCCTTCCCCTGCAACCAGTT
TGGTCAGCAGGAGCCCGACAGCAACAAGGAGATCGAGAGCTTCGCCCGTCGCACCTACAG
TGTCTCTTTCCCCATGTTCAGCAAGATCGCAGTCACGGGCACAGGGGCCCACCCTGCCTT
CAAGTACCTGACCCAGACTTCCGGGAAGGAGCCCACCTGGAACTTCTGGAAGTACCTCGT
GGCCCCAGATGGAAAGGTAGTAGGGGCTTGGGACCCAACCGTGTCGGTGGAGGAGATCAG
GCCTCAGATTACGGCGCTCGTGAGGAAGCTCATCCTGAAGAAGCGAGAAGACTTGTAACC
ACTTTCCCTTCCTCTCCCACTGCCCCCTACCCCATGCACAGGTGACCAAAGCAAACGCAA
ATGGTGCTACAAAGGGAGAGACTACTGACTCTCCCTTCTCCTCTCTTATCCCCCCACCCC
ATCACTCCCGTGGGCGGAAAAGTCTAGCAGTTGGATTGCTTGCATCTTGGAGCACCGTCT
CGGAACTCCTGACCAGTGAGAGCTCTTGACCAGTCATTCACCAGCCAATAAGAACCTCTA
GCGCATGAACACATGTGCCTAACAAGTCTTTCAAGCAATCATCTCCTACCTGTTAAGAAC
TCTGCAAAATGAAGCCGACTCCTACCTCACAGGGCTGTTGTGAGGATGAGATTGAAAGAC
CTGTGAAAGTGCCAGGGGCAGGGCCAGCTAACTAGGAGGAATTCAATAAATGTTCTGCAT
ATGAACCAAAAAATAACTTGTGATCAAAAAAACCTTGCACCCAACATGAATTTCTAGCCA
TAATGATCCGGGCCAAACATTTATTTGTTGTTAGTATGTTCCTGTGTGTTTTTTTTTAAT
TACAGAAGTCATACAAAGTCATTATAAAAGGTGCTACAAAATAAAAAATGAAAGAATCCC
CCCTCATTGTCTATACTCTCACTCCCTGAAGGTAAACACTGTTAGAAATTTCGTACGAAA
TCTTCCCAGACTTTTTTTTTTCATCAAGCCAGTCATTATTGCCCACTAAGAATTCAATGA
CTGAAAGTACACTACAGTTACAAACAAGCAGAAGAATATAGATGGATAATAAGAATATGA
AAAGATGTCCAGCCTCATTCAGTTGGGAAGATTGTTTTAAAATGATAATACCTATTGTTG
GTAAGGGTGTGGGGAAATGGGTATTCACTTCGACTGTTGTCAGGACAGTAAACTGGCACA
AGTTTTTAGAGGATGATTTGTCACTATCTTTTAAAACAAAATATTTATATTCTTTGATCC
ATCATTCCTCCTTTGACTCCCAAACTGTGCAAATATGTGGGTACAATAATATGTATGTAC
ATTGTTCATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGCCGTCGCCACGCCGTCCGCTCTCCGGCGAGTCATGGTGGCTGCACTCGTGGCGGC
GTGGCTGCTCCTGGCGGCGGCGGCCCGCGCGCAGCGGGAGCAGGACTTCTACGACTTCAA
GGCGGTCAACATCCGGGGCAAGTTGGTGTCGCTGGAGAAGTACCGCGGCTCGGTGTCCCT
TGTGGTGAATGTGGCTAGCGAGTGTGGCTTCACAGACCAGCACTACCGCGCCCTGCAGCA
GCTGCAGAGGGACCTGGGGCCCCACCACTTCAACGTGCTCGCCTTCCCCTGCAACCAGTT
TGGTCAGCAGGAGCCCGACAGCAACAAGGAGATCGAGAGCTTCGCCCGTCGCACCTACAG
TGTCTCTTTCCCCATGTTCAGCAAGATCGCAGTCACGGGCACAGGGGCCCACCCTGCCTT
CAAGTACCTGACCCAGACTTCCGGGAAGGAGCCCACCTGGAACTTCTGGAAGTACCTCGT
GGCCCCAGATGGAAAGGTAGTAGGGGCTTGGGACCCAACCGTGTCGGTGGAGGAGATCAG
GCCTCAGATTACGGCGCTCGTGAGGAAGCTCATCCTGAAGAAGCGAGAAGACTTGTAACC
ACTTTCCCTTCCTCTCCCACTGCCCCCTACCCCATGCACAGGTGACCAAAGCAAACGCAA
ATGGTGCTACAAAGGGAGAGACTACTGACTCTCCCTTCTCCTCTCTTATCCCCCCACCCC
ATCACTCCCGTGGGCGGAAAAGTCTAGCAGTTGGATTGCTTGCATCTTGGAGCACCGTCT
CGGAACTCCTGACCAGTGAGAGCTCTTGACCAGTCATTCACCAGCCAATAAGAACCTCTA
GCGCATGAACACATGTGCCTAACAAGTCTTTCAAGCAATCATCTCCTACCTGTTAAGAAC
TCTGCAAAATGAAGCCGACTCCTACCTCACAGGGCTGTTGTGAGGATGAGATTGAAAGAC
CTGTGAAAGTGCCAGGGGCAGGGCCAGCTAACTAGGAGGAATTCAATAAATGTTCTGCAT
ATGAACCAAAAAATAACTTGTGATCAAAAAAACCTTGCACCCAACATGAATTTCTAGCCA
TAATGATCCGGGCCAAACATTTATTTGTTGTTAGTATGTTCCTGTGTGTTTTTTTTTAAT
TACAGAAGTCATACAAAGTCATTATAAAAGGTGCTACAAAATAAAAAATGAAAGAATCCC
CCCTCATTGTCTATACTCTCACTCCCTGAAGGTAAACACTGTTAGAAATTTCGTACGAAA
TCTTCCCAGACTTTTTTTTTTCATCAAGCCAGTCATTATTGCCCACTAAGAATTCAATGA
CTGAAAGTACACTACAGTTACAAACAAGCAGAAGAATATAGATGGATAATAAGAATATGA
AAAGATGTCCAGCCTCATTCAGTTGGGAAGATTGTTTTAAAATGATAATACCTATTGTTG
GTAAGGGTGTGGGGAAATGGGTATTCACTTCGACTGTTGTCAGGACAGTAAACTGGCACA
AGTTTTTAGAGGATGATTTGTCACTATCTTTTAAAACAAAATATTTATATTCTTTGATCC
ATCATTCCTCCTTTGACTCCCAAACTGTGCAAATATGTGGGTACAATAATATGTATGTAC
ATTGTTCATAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5T501_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5T501_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               849-966, - strand, RNAz p=0.573382

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               849-966, - strand, RNAz p=0.573382

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-1202, gnl|bosTau2|chr27 (16020222-16019070)
               

               
               9-1202, gnl|Hg17|chr1 (52780074-52786741)
               

               
               9-1202, gnl|Mm7|chr4 (107783145-107776787)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1202, gnl|bosTau2|chr27 (16020222-16019070)
               

               
               9-1202, gnl|Hg17|chr1 (52780074-52786741)
               

               
               9-1202, gnl|Mm7|chr4 (107783145-107776787)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	9-1202, gnl\|bosTau2\|chr27 (16020222-16019070)
	9-1202, gnl\|Hg17\|chr1 (52780074-52786741)
	9-1202, gnl\|Mm7\|chr4 (107783145-107776787)

	nca (0.273748)
	ese (0.253004)
	nms (0.213858)
	nep (0.183925)
	nje (0.16592)
	nco (0.161734)
	lun (0.150489)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	ssp (0.13552)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	jej (0.0989218)