Non-Coding RNA Search

Ss1.1-Pig4-TMW8016G02.5

Sequence:


               
               GAAGCCGGTTCCTGGTACCAGGCTGCGTAGGAGGGGTTCGGGCCTAACTGCTGGTCCCGT
GGCTTCTGTCGGGAAAAGCAAGGCATGAAGATCACAAGGCAGAAACACGCCAAGAAGCAT
CTTGGCTTCTTCCGCAACAATTTCGGGGTCCGCGAACCGTACCAGATCCTGGTGGACGGC
ACCTTCTGTCAGGCGGCGCTGCGGGGCCGCATCCAGCTGCGGGAACAGCTGCCCCGCTAC
CTAATGGGGGAGACTCAGCTGTGCACCACCAGGTGTGTGTTGAAAGAGTTAGAAACATTG
GGAAAGGATTTATATGGGGCAAAACTGATTGCACAAAAATGCCAGGTTCGAAATTGCCCC
CATTTCAAGAATGCAGTGAGTGGCTCAGAATGTCTGCTTTCCATGGTTGAAGACGGAAAT
CCTCATCATTATTTTGTGGCAACACAGGACCAGAATTTGTCTATGAAAATAAAGAAAAGG
CCTGGAATTCCTCTCATGTTTATTATCCAGAACACCATAGTCTTGGATAAACCTTCTCCC
AAAACAATTGCATTTGTTAAAGCAGTAGAGTCAGGTCAGCTTGTCTCAGTGCATGAGAAA
CAGAGTATCAGGCAACTCAAAGAGGAACAGGGTTTAGTGAGAGACCCTGAACTGAGAAGA
AGAAAAAAACGCAAGAAAATAAGTGGCCCGAATCCTCTTAGCTGTTTGAAGAAAAAGAAA
AAAGCACAGGGTACAAACTCATCTCCTTCTGAAAAGAAAAGAAAAAGAAAAAGAATCCGG
AACAGATCTACCTCAAAAGTACTTTCTGAAAAGCAGAATAATGCAGAAGCAGAAGGGTAA
TGAAACCTTTGAATACTTTTAAAGACATTCAAATATGGAAAATAAATTTGATTTTGAAAC
TAGACATACTTATACCAAAAGACTAGACTTATTTTTGTGAATGAATATAAACCCACATGC
CTTTGTATAAAATTATTTATTAAAAAACCGGATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCGGTTCCTGGTACCAGGCTGCGTAGGAGGGGTTCGGGCCTAACTGCTGGTCCCGT
GGCTTCTGTCGGGAAAAGCAAGGCATGAAGATCACAAGGCAGAAACACGCCAAGAAGCAT
CTTGGCTTCTTCCGCAACAATTTCGGGGTCCGCGAACCGTACCAGATCCTGGTGGACGGC
ACCTTCTGTCAGGCGGCGCTGCGGGGCCGCATCCAGCTGCGGGAACAGCTGCCCCGCTAC
CTAATGGGGGAGACTCAGCTGTGCACCACCAGGTGTGTGTTGAAAGAGTTAGAAACATTG
GGAAAGGATTTATATGGGGCAAAACTGATTGCACAAAAATGCCAGGTTCGAAATTGCCCC
CATTTCAAGAATGCAGTGAGTGGCTCAGAATGTCTGCTTTCCATGGTTGAAGACGGAAAT
CCTCATCATTATTTTGTGGCAACACAGGACCAGAATTTGTCTATGAAAATAAAGAAAAGG
CCTGGAATTCCTCTCATGTTTATTATCCAGAACACCATAGTCTTGGATAAACCTTCTCCC
AAAACAATTGCATTTGTTAAAGCAGTAGAGTCAGGTCAGCTTGTCTCAGTGCATGAGAAA
CAGAGTATCAGGCAACTCAAAGAGGAACAGGGTTTAGTGAGAGACCCTGAACTGAGAAGA
AGAAAAAAACGCAAGAAAATAAGTGGCCCGAATCCTCTTAGCTGTTTGAAGAAAAAGAAA
AAAGCACAGGGTACAAACTCATCTCCTTCTGAAAAGAAAAGAAAAAGAAAAAGAATCCGG
AACAGATCTACCTCAAAAGTACTTTCTGAAAAGCAGAATAATGCAGAAGCAGAAGGGTAA
TGAAACCTTTGAATACTTTTAAAGACATTCAAATATGGAAAATAAATTTGATTTTGAAAC
TAGACATACTTATACCAAAAGACTAGACTTATTTTTGTGAATGAATATAAACCCACATGC
CTTTGTATAAAATTATTTATTAAAAAACCGGATGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868006|ref|XP_614773.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868006|ref|XP_614773.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               75-274, - strand, RNAz p=0.820239
               

               
               605-761, + strand, RNAz p=0.99952

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-274, - strand, RNAz p=0.820239
               

               
               605-761, + strand, RNAz p=0.99952

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               35-275, gnl|bosTau2|chr14 (29744502-29744263)
               

               
               35-275, gnl|Hg17|chr8 (117847979-117848214)
               

               
               35-275, gnl|Mm7|chr15 (51931851-51932078)
               


               
               446-913, gnl|bosTau2|chr14 (29739654-29739197)
               

               
               446-913, gnl|Hg17|chr8 (117852874-117853347)
               

               
               446-913, gnl|Mm7|chr15 (51936514-51936987)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-275, gnl|bosTau2|chr14 (29744502-29744263)
               

               
               35-275, gnl|Hg17|chr8 (117847979-117848214)
               

               
               35-275, gnl|Mm7|chr15 (51931851-51932078)
               


               
               446-913, gnl|bosTau2|chr14 (29739654-29739197)
               

               
               446-913, gnl|Hg17|chr8 (117852874-117853347)
               

               
               446-913, gnl|Mm7|chr15 (51936514-51936987)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               mgp (0.461361)
               

               
               aor (0.390549)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               aor (0.390549)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	75-274, - strand, RNAz p=0.820239
	605-761, + strand, RNAz p=0.99952

	35-275, gnl\|bosTau2\|chr14 (29744502-29744263)
	35-275, gnl\|Hg17\|chr8 (117847979-117848214)
	35-275, gnl\|Mm7\|chr15 (51931851-51932078)

	446-913, gnl\|bosTau2\|chr14 (29739654-29739197)
	446-913, gnl\|Hg17\|chr8 (117852874-117853347)
	446-913, gnl\|Mm7\|chr15 (51936514-51936987)

	mgp (0.461361)
	aor (0.390549)
	thg (0.380373)
	vin (0.332557)
	bfe (0.299715)
	ski (0.29347)
	cte (0.29274)
	spl (0.286369)
	ste (0.270416)
	cbe (0.239234)
	hea (0.204499)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	cki (0.165235)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	ret (0.128733)
	med (0.116252)
	cbl (0.114797)
	spc (0.113366)