Ss1.1-Pig4-TMW8016I02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCTGGAGAGAGGAGTGGTAGGAACGGGTCCCTGGAGTTGTGAATCCCGTGCAGGAGT AAAGAGAAGCAATGCAGAAGTCAGAGTGCCATGGAGGCGTACAGTTGAGAAACAGAGTAA CAGATGACCATGATGAAAGGACATCATTGAGTGCGCAAGTGAAACATAGGACTACAGTTC AACAAAGCAAATCCTTGTCAACCAGTTCTCCAGAATCTGCAAGACAACTTTATCCTCGAC CGAGTGATAAACTTAACCCTAAGACAATTAACCCATTTGGTGAACAATCACGAGTGCCTT CTGCATTTGCAGCTGTTTACTCTAAAGGAGGTATTCCCTGCAGGTTGGTCCACGGTTCTG TGAAACACAGGTTGCAGTGGGACTGTCCTCCTGAAAATCTTCCATTTGACCCTCTTCTTA TTACTTTAGCTGAGGGTCTGAGAGAGACTAAACATCCATATACGTTTGTGTCAAAGGAAG GTTTTAGAGAATTACTCTTGGTCGCAGGTGCTCCTGAAAAAGCTGTGCCTTTGCTTCCTA GACTGATTCCCGTGCTGAAGGCAGCTCTGGTCCACTTGGATGATGACGTCTTTGAAAGAG GACTGAATGCCCTGGTACAGCTCAGTGGCGTTGTGGGTCCTTCTCTGAATGACCATCTGA AACATCTGCTTACAAGTCTTTCCAAGAGACTAAGGGACAAGAAATTCAAAGAGCCAATCA CCAGTGCATTACAGAAGCTAGAGCAGCATGGCGGAAGTGGGAGCCTCCTCATCATCAAAT CTAAAATTCCAACATATTGCTCCATACGCTGTTGAAGAAAGGGACCAACAGAAACCTCAC CACCAGGCGTTAAAAAGCACTGGCCATGGGTATCTGCAGAACTTTGCAGATTCACTTTAG TTTAGTCTCTTGTAAATCACAGCTGACCTTCGGTATTTACTGGCTTTACATGAGTATACA CAGTTCCACTGAATCATAGTGCACGTTATTCATCCAAAAAAAAAAAAAAAAAAGAATGGT TAATGATGGAAAACTATTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCTGGAGAGAGGAGTGGTAGGAACGGGTCCCTGGAGTTGTGAATCCCGTGCAGGAGT AAAGAGAAGCAATGCAGAAGTCAGAGTGCCATGGAGGCGTACAGTTGAGAAACAGAGTAA CAGATGACCATGATGAAAGGACATCATTGAGTGCGCAAGTGAAACATAGGACTACAGTTC AACAAAGCAAATCCTTGTCAACCAGTTCTCCAGAATCTGCAAGACAACTTTATCCTCGAC CGAGTGATAAACTTAACCCTAAGACAATTAACCCATTTGGTGAACAATCACGAGTGCCTT CTGCATTTGCAGCTGTTTACTCTAAAGGAGGTATTCCCTGCAGGTTGGTCCACGGTTCTG TGAAACACAGGTTGCAGTGGGACTGTCCTCCTGAAAATCTTCCATTTGACCCTCTTCTTA TTACTTTAGCTGAGGGTCTGAGAGAGACTAAACATCCATATACGTTTGTGTCAAAGGAAG GTTTTAGAGAATTACTCTTGGTCGCAGGTGCTCCTGAAAAAGCTGTGCCTTTGCTTCCTA GACTGATTCCCGTGCTGAAGGCAGCTCTGGTCCACTTGGATGATGACGTCTTTGAAAGAG GACTGAATGCCCTGGTACAGCTCAGTGGCGTTGTGGGTCCTTCTCTGAATGACCATCTGA AACATCTGCTTACAAGTCTTTCCAAGAGACTAAGGGACAAGAAATTCAAAGAGCCAATCA CCAGTGCATTACAGAAGCTAGAGCAGCATGGCGGAAGTGGGAGCCTCCTCATCATCAAAT CTAAAATTCCAACATATTGCTCCATACGCTGTTGAAGAAAGGGACCAACAGAAACCTCAC CACCAGGCGTTAAAAAGCACTGGCCATGGGTATCTGCAGAACTTTGCAGATTCACTTTAG TTTAGTCTCTTGTAAATCACAGCTGACCTTCGGTATTTACTGGCTTTACATGAGTATACA CAGTTCCACTGAATCATAGTGCACGTTATTCATCCAAAAAAAAAAAAAAAAAAGAATGGT TAATGATGGAAAACTATTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 395-571, gnl|bosTau2|chr6 (17867678-17867503) | |
| 395-571, gnl|canFam2|chr3 (91731094-91731219) | |
| 395-571, gnl|canFam2|chr3 (91731287-91731080) | |
| 395-571, gnl|echTel1|scaffold_316089 (7395-7515) | |
| 395-571, gnl|echTel1|scaffold_316089 (7567-7379) | |
| 395-571, gnl|galGal2|chr4 (75298911-75298697) | |
| 395-571, gnl|hg17|chr1 (183281544-183281670) | |
| 395-571, gnl|hg17|chr4 (20390628-20390821) | |
| 395-571, gnl|Hg17|chr4 (20390651-20390816) | |
| 395-571, gnl|loxAfr1|scaffold_25554 (34669-34792) | |
| 395-571, gnl|loxAfr1|scaffold_25554 (34832-34653) | |
| 395-571, gnl|mm7|chr5 (47705333-47705224) | |
| 395-571, gnl|mm7|chr5 (47705148-47705349) | |
| 395-571, gnl|Mm7|chr5 (47705173-47705344) | |
| 395-571, gnl|monDom2|scaffold_10 (18524389-18524222) | |
| 395-571, gnl|monDom2|scaffold_26 (29083223-29083098) | |
| 395-571, gnl|oryCun1|scaffold_103450 (5077-4884) | |
| 395-571, gnl|oryCun1|scaffold_211450 (11709-11584) | |
| 395-571, gnl|panTro1|chr1 (165861289-165861415) | |
| 395-571, gnl|panTro1|chr3_random (34416658-34416851) | |
| 395-571, gnl|rheMac2|chr1 (184139736-184139610) | |
| 395-571, gnl|rheMac2|chr5 (15505901-15506094) | |
| 395-571, gnl|rn3|chr14 (67480427-67480226) | |
| 395-571, gnl|rn3|chr2 (137734979-137735100) | |
| 759-1043, gnl|bosTau2|chr6 (17859336-17859073) | |
| 759-1043, gnl|Hg17|chr4 (20405177-20405425) | |
| 759-1043, gnl|Mm7|chr5 (47713981-47714231) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 395-571, gnl|bosTau2|chr6 (17867678-17867503) | |
| 395-571, gnl|canFam2|chr3 (91731094-91731219) | |
| 395-571, gnl|canFam2|chr3 (91731287-91731080) | |
| 395-571, gnl|echTel1|scaffold_316089 (7395-7515) | |
| 395-571, gnl|echTel1|scaffold_316089 (7567-7379) | |
| 395-571, gnl|galGal2|chr4 (75298911-75298697) | |
| 395-571, gnl|hg17|chr1 (183281544-183281670) | |
| 395-571, gnl|hg17|chr4 (20390628-20390821) | |
| 395-571, gnl|Hg17|chr4 (20390651-20390816) | |
| 395-571, gnl|loxAfr1|scaffold_25554 (34669-34792) | |
| 395-571, gnl|loxAfr1|scaffold_25554 (34832-34653) | |
| 395-571, gnl|mm7|chr5 (47705333-47705224) | |
| 395-571, gnl|mm7|chr5 (47705148-47705349) | |
| 395-571, gnl|Mm7|chr5 (47705173-47705344) | |
| 395-571, gnl|monDom2|scaffold_10 (18524389-18524222) | |
| 395-571, gnl|monDom2|scaffold_26 (29083223-29083098) | |
| 395-571, gnl|oryCun1|scaffold_103450 (5077-4884) | |
| 395-571, gnl|oryCun1|scaffold_211450 (11709-11584) | |
| 395-571, gnl|panTro1|chr1 (165861289-165861415) | |
| 395-571, gnl|panTro1|chr3_random (34416658-34416851) | |
| 395-571, gnl|rheMac2|chr1 (184139736-184139610) | |
| 395-571, gnl|rheMac2|chr5 (15505901-15506094) | |
| 395-571, gnl|rn3|chr14 (67480427-67480226) | |
| 395-571, gnl|rn3|chr2 (137734979-137735100) | |
| 759-1043, gnl|bosTau2|chr6 (17859336-17859073) | |
| 759-1043, gnl|Hg17|chr4 (20405177-20405425) | |
| 759-1043, gnl|Mm7|chr5 (47713981-47714231) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| eye (0.170503) | |
| pla (0.133672) |