Ss1.1-Pig4-TMW8016I16.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACAACTCGGCAACGGACCAAGATGGCGGCGCCCAGTGAGGGGCCAGCGTTTGCCGCGG GGGTCGAAAAAAATTGGAGTGCAATTGTTCGCTCCCCAGAAGGGACTCCCCAAAAAGTTC GGCAGCTGATAGATGAGGGGATTGCCCCAGAAGAGGGAAGCGCCGAAGCAAAGGACACAT CTGCCACATTCCAGCCAGTTAATGGATCACCCCAAGCAGAAGAACCTCCGTTGGAATCTA CAAGCAAAGAAGCCTTCTTTAGCAGAGTGGAAACATTTTCTTCTTTGAAATGGGCAGGTA AGCCCCCTGAGCTCTCTCCACTGGTCTGTGCGAAATACGGCTGGGTCACAGTTGAATGTG ATATGCTGAAGTGCTCCAGCTGTCAAGCTTTTCTCTGTGCCACTTTACAACCAGCTTTTG ATTTTGACAGATATAAGGAACGATGTGCTGAGCTGAAGAAAGCCTTGTGTACTGCCCATG AGAAGTTCTGTTTCTGGCCAGACAGCCCCTCTCCAGATCGATTTGGGATGTTGCCTTTGG ATGAGCCTGGTGTTCTTGTTAGTGAATTCTTAGATCGTTTTCAAAGCCTTTGTCACTTGG ACCTCCAGCTTCCTTCCCTGAGGCCAGAGGACTTAAAAACTATGTGCTTGACAGAAGACA AGATCACTCTTCTCCTGCACCTGCTTGAAGATGAACTTGATCATCGAACTGATGAGAGAA AAACTGCAATCAAATTAGGCTCTGACATCCAAGTCCACGTCACTGCCTGTATTCTTTCCG TGTGTGGCTGGGCGTGTAGTTCTGCTCTGGAGCCCGTGCAGCTCTCCCTGATAACATGTT CACAGTGCATGAGGAAGGTGGGGCTCTGGGGCTTCCAGCAGATGGAATCCCTGGCCGACC TGGATGCCTCCTTCGGGCTGACCAGCTCCCCTGTCCCCGGCTCCGAGGGCCGGCCCGAGC GCTTCCCTCTGGTGCCTGAGTCTCCCCGGAGGATGATGACTCGGAGCCAGGATGCCACGT TTTCCCCAGGCTCAGAGCAGGCTGAAAGGAGCCCAGGTCCCATTGTCACCCGAACTCGGA GCTGGGACTCTTCCAGTCCTATTGACCGTCCTGAGCCTGAGGCCGCTAGCCCCACCACCA GAACCCGCCCAGTGACCCGAAGCATGGGCACAGGAGACACTGCTGGCCTGGAAGTGCCAT CTAGTCCTCTTAGGAGAGCCAAACGAGCTCGCCTCTGCTCCTCCAGCAGCTCGGACGCGT CTCCCCGAGGCTTCTTCGATCCCACCTCTCAGCACAGAGACTGGTGCCCTTGGGTGAACA TCACACTTGGCAAAGAAAGCAAGGAGAGTGGTGGAGCTGAGGTGGATGCCAGCACCCCTG CAGAGCCGGGCTGGAGGGCAGTGCTGAACAGCCTCTTGGCCCACAAACAGTCTAACCAGC CCGCTGAAACCGACTCCATGAGTCTGTCTGAGAAGTCCAGGAAGGTATTCCGAATATTCC GGCAGTGGGAGTCTTTATGCTCATCCTGAAGATATTCCAGCCCTTCCTGCGGAGAAGTGG AATGAGTGGCTTTGAAAAATAAAGCCTGAGTTCCCCCTTGAGCACCTGATGTTAAGTGTT TCTCCATTCTGGTTTAATCATAAGGAACCTCTGGCTTGGCAAAGGCATGAGTGTCACCAA CGGCATCTGACCGAGGGGAACCCCTGTGCCTGCGAGGACGTGGGCAGGGAGAGCTACAGT GACCCTGTTAGAAGAGTGTGTGGTTACGAAACGACAGAGGACCCAGGGCTCCTTATAAAA TTCGACAGAGGACCCAGGACCTGAGCATTTTTAGTGTCTTTAGTGACAGCATTGCTTTGA GGACTTCTATCCCAAGAATATGTCATTATGAGCTAATAAAATATTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACAACTCGGCAACGGACCAAGATGGCGGCGCCCAGTGAGGGGCCAGCGTTTGCCGCGG GGGTCGAAAAAAATTGGAGTGCAATTGTTCGCTCCCCAGAAGGGACTCCCCAAAAAGTTC GGCAGCTGATAGATGAGGGGATTGCCCCAGAAGAGGGAAGCGCCGAAGCAAAGGACACAT CTGCCACATTCCAGCCAGTTAATGGATCACCCCAAGCAGAAGAACCTCCGTTGGAATCTA CAAGCAAAGAAGCCTTCTTTAGCAGAGTGGAAACATTTTCTTCTTTGAAATGGGCAGGTA AGCCCCCTGAGCTCTCTCCACTGGTCTGTGCGAAATACGGCTGGGTCACAGTTGAATGTG ATATGCTGAAGTGCTCCAGCTGTCAAGCTTTTCTCTGTGCCACTTTACAACCAGCTTTTG ATTTTGACAGATATAAGGAACGATGTGCTGAGCTGAAGAAAGCCTTGTGTACTGCCCATG AGAAGTTCTGTTTCTGGCCAGACAGCCCCTCTCCAGATCGATTTGGGATGTTGCCTTTGG ATGAGCCTGGTGTTCTTGTTAGTGAATTCTTAGATCGTTTTCAAAGCCTTTGTCACTTGG ACCTCCAGCTTCCTTCCCTGAGGCCAGAGGACTTAAAAACTATGTGCTTGACAGAAGACA AGATCACTCTTCTCCTGCACCTGCTTGAAGATGAACTTGATCATCGAACTGATGAGAGAA AAACTGCAATCAAATTAGGCTCTGACATCCAAGTCCACGTCACTGCCTGTATTCTTTCCG TGTGTGGCTGGGCGTGTAGTTCTGCTCTGGAGCCCGTGCAGCTCTCCCTGATAACATGTT CACAGTGCATGAGGAAGGTGGGGCTCTGGGGCTTCCAGCAGATGGAATCCCTGGCCGACC TGGATGCCTCCTTCGGGCTGACCAGCTCCCCTGTCCCCGGCTCCGAGGGCCGGCCCGAGC GCTTCCCTCTGGTGCCTGAGTCTCCCCGGAGGATGATGACTCGGAGCCAGGATGCCACGT TTTCCCCAGGCTCAGAGCAGGCTGAAAGGAGCCCAGGTCCCATTGTCACCCGAACTCGGA GCTGGGACTCTTCCAGTCCTATTGACCGTCCTGAGCCTGAGGCCGCTAGCCCCACCACCA GAACCCGCCCAGTGACCCGAAGCATGGGCACAGGAGACACTGCTGGCCTGGAAGTGCCAT CTAGTCCTCTTAGGAGAGCCAAACGAGCTCGCCTCTGCTCCTCCAGCAGCTCGGACGCGT CTCCCCGAGGCTTCTTCGATCCCACCTCTCAGCACAGAGACTGGTGCCCTTGGGTGAACA TCACACTTGGCAAAGAAAGCAAGGAGAGTGGTGGAGCTGAGGTGGATGCCAGCACCCCTG CAGAGCCGGGCTGGAGGGCAGTGCTGAACAGCCTCTTGGCCCACAAACAGTCTAACCAGC CCGCTGAAACCGACTCCATGAGTCTGTCTGAGAAGTCCAGGAAGGTATTCCGAATATTCC GGCAGTGGGAGTCTTTATGCTCATCCTGAAGATATTCCAGCCCTTCCTGCGGAGAAGTGG AATGAGTGGCTTTGAAAAATAAAGCCTGAGTTCCCCCTTGAGCACCTGATGTTAAGTGTT TCTCCATTCTGGTTTAATCATAAGGAACCTCTGGCTTGGCAAAGGCATGAGTGTCACCAA CGGCATCTGACCGAGGGGAACCCCTGTGCCTGCGAGGACGTGGGCAGGGAGAGCTACAGT GACCCTGTTAGAAGAGTGTGTGGTTACGAAACGACAGAGGACCCAGGGCTCCTTATAAAA TTCGACAGAGGACCCAGGACCTGAGCATTTTTAGTGTCTTTAGTGACAGCATTGCTTTGA GGACTTCTATCCCAAGAATATGTCATTATGAGCTAATAAAATATTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 52-437, + strand, RNAz p=0.926972 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 52-437, + strand, RNAz p=0.926972 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC000190, + |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 5-169, gnl|bosTau2|chr4 (49037988-49038152) | |
| 5-169, gnl|Hg17|chr7 (129285176-129285012) | |
| 5-169, gnl|Mm7|chr6 (30323166-30323003) | |
| 171-281, gnl|bosTau2|chr4 (49040097-49040207) | |
| 171-281, gnl|Hg17|chr7 (129282934-129282824) | |
| 171-281, gnl|Mm7|chr6 (30319677-30319567) | |
| 282-437, gnl|bosTau2|chr4 (49043834-49043989) | |
| 282-437, gnl|canFam2|chr14 (9789196-9788998) | |
| 282-437, gnl|danRer3|chr4 (17045437-17045638) | |
| 282-437, gnl|dasNov1|scaffold_4338 (45025-45175) | |
| 282-437, gnl|echTel1|scaffold_304968 (32430-32608) | |
| 282-437, gnl|fr1|chrUn (180805853-180805678) | |
| 282-437, gnl|galGal2|chr14 (14785639-14785832) | |
| 282-437, gnl|hg17|chr7 (129274735-129274933) | |
| 282-437, gnl|Hg17|chr7 (129274892-129274737) | |
| 282-437, gnl|loxAfr1|scaffold_10029 (43077-42900) | |
| 282-437, gnl|mm7|chr6 (30314676-30314854) | |
| 282-437, gnl|Mm7|chr6 (30314833-30314678) | |
| 282-437, gnl|monDom2|scaffold_22 (14424990-14424802) | |
| 282-437, gnl|panTro1|chr6 (131745883-131746081) | |
| 282-437, gnl|rheMac2|chr3 (167414820-167415018) | |
| 282-437, gnl|rn3|chr4 (57572342-57572520) | |
| 282-437, gnl|tetNig1|chr19 (3000980-3001155) | |
| 282-437, gnl|xenTro1|scaffold_20 (2745863-2745666) | |
| 514-644, gnl|bosTau2|chr4 (49047478-49047608) | |
| 514-644, gnl|canFam2|chr14 (9795445-9795285) | |
| 514-644, gnl|danRer3|chr4 (17045077-17045213) | |
| 514-644, gnl|dasNov1|scaffold_10821 (4779-4619) | |
| 514-644, gnl|fr1|chrUn (180806234-180806101) | |
| 514-644, gnl|galGal2|chr14 (14784066-14784223) | |
| 514-644, gnl|hg17|chr7 (129262684-129262844) | |
| 514-644, gnl|Hg17|chr7 (129262823-129262693) | |
| 514-644, gnl|mm7|chr6 (30308076-30308236) | |
| 514-644, gnl|Mm7|chr6 (30308215-30308085) | |
| 514-644, gnl|monDom2|scaffold_22 (14429218-14429058) | |
| 514-644, gnl|oryCun1|scaffold_177192 (199-357) | |
| 514-644, gnl|panTro1|chr6 (131730860-131731020) | |
| 514-644, gnl|rheMac2|chr3 (167400064-167400224) | |
| 514-644, gnl|rn3|chr4 (57565453-57565613) | |
| 514-644, gnl|tetNig1|chr19 (3000599-3000703) | |
| 797-1041, gnl|bosTau2|chr4 (49050025-49050272) | |
| 797-1041, gnl|Hg17|chr7 (129258300-129258053) | |
| 797-1041, gnl|Mm7|chr6 (30305632-30305388) | |
| 1253-1460, gnl|bosTau2|chr4 (49051282-49051489) | |
| 1253-1460, gnl|Hg17|chr7 (129256317-129256110) | |
| 1253-1460, gnl|Mm7|chr6 (30302618-30302411) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-169, gnl|bosTau2|chr4 (49037988-49038152) | |
| 5-169, gnl|Hg17|chr7 (129285176-129285012) | |
| 5-169, gnl|Mm7|chr6 (30323166-30323003) | |
| 171-281, gnl|bosTau2|chr4 (49040097-49040207) | |
| 171-281, gnl|Hg17|chr7 (129282934-129282824) | |
| 171-281, gnl|Mm7|chr6 (30319677-30319567) | |
| 282-437, gnl|bosTau2|chr4 (49043834-49043989) | |
| 282-437, gnl|canFam2|chr14 (9789196-9788998) | |
| 282-437, gnl|danRer3|chr4 (17045437-17045638) | |
| 282-437, gnl|dasNov1|scaffold_4338 (45025-45175) | |
| 282-437, gnl|echTel1|scaffold_304968 (32430-32608) | |
| 282-437, gnl|fr1|chrUn (180805853-180805678) | |
| 282-437, gnl|galGal2|chr14 (14785639-14785832) | |
| 282-437, gnl|hg17|chr7 (129274735-129274933) | |
| 282-437, gnl|Hg17|chr7 (129274892-129274737) | |
| 282-437, gnl|loxAfr1|scaffold_10029 (43077-42900) | |
| 282-437, gnl|mm7|chr6 (30314676-30314854) | |
| 282-437, gnl|Mm7|chr6 (30314833-30314678) | |
| 282-437, gnl|monDom2|scaffold_22 (14424990-14424802) | |
| 282-437, gnl|panTro1|chr6 (131745883-131746081) | |
| 282-437, gnl|rheMac2|chr3 (167414820-167415018) | |
| 282-437, gnl|rn3|chr4 (57572342-57572520) | |
| 282-437, gnl|tetNig1|chr19 (3000980-3001155) | |
| 282-437, gnl|xenTro1|scaffold_20 (2745863-2745666) | |
| 514-644, gnl|bosTau2|chr4 (49047478-49047608) | |
| 514-644, gnl|canFam2|chr14 (9795445-9795285) | |
| 514-644, gnl|danRer3|chr4 (17045077-17045213) | |
| 514-644, gnl|dasNov1|scaffold_10821 (4779-4619) | |
| 514-644, gnl|fr1|chrUn (180806234-180806101) | |
| 514-644, gnl|galGal2|chr14 (14784066-14784223) | |
| 514-644, gnl|hg17|chr7 (129262684-129262844) | |
| 514-644, gnl|Hg17|chr7 (129262823-129262693) | |
| 514-644, gnl|mm7|chr6 (30308076-30308236) | |
| 514-644, gnl|Mm7|chr6 (30308215-30308085) | |
| 514-644, gnl|monDom2|scaffold_22 (14429218-14429058) | |
| 514-644, gnl|oryCun1|scaffold_177192 (199-357) | |
| 514-644, gnl|panTro1|chr6 (131730860-131731020) | |
| 514-644, gnl|rheMac2|chr3 (167400064-167400224) | |
| 514-644, gnl|rn3|chr4 (57565453-57565613) | |
| 514-644, gnl|tetNig1|chr19 (3000599-3000703) | |
| 797-1041, gnl|bosTau2|chr4 (49050025-49050272) | |
| 797-1041, gnl|Hg17|chr7 (129258300-129258053) | |
| 797-1041, gnl|Mm7|chr6 (30305632-30305388) | |
| 1253-1460, gnl|bosTau2|chr4 (49051282-49051489) | |
| 1253-1460, gnl|Hg17|chr7 (129256317-129256110) | |
| 1253-1460, gnl|Mm7|chr6 (30302618-30302411) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| hea (0.204499) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| che (0.136314) | |
| pla (0.133672) | |
| ova (0.129132) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| hea (0.204499) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| eli (0.151814) | |
| che (0.136314) | |
| pla (0.133672) | |
| ova (0.129132) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |