Non-Coding RNA Search

Ss1.1-Pig4-TMW8016I17.3

Sequence:


               
               TAATACAATGAAAACTGTTGGAGAAATATTTAAACACCTCGATGTAGGTACAGTATACAA
TACTCTTGTTGGGGGGACGGGATTTACCAGAATATAGTTTATTCAGTGAATTCCAAAAAA
AGATGAATCTGTCCGTGATATGTGTGTATTATAACTTCTTAATCTCGCTGTTGAGCTGTA
TACATGGTTTAAAAAAAATACATAGTGCTGTTTAACGCTGAGTAAGGCAGCAGCCATTGT
GTATTTGGGCTTTTTAGATAAAATTAGAGCTGTAAGGAAAGCGGAATGCCACAAACACAG
AATGTTCTTAAATGAAATAGGCATTGTCAGCTGGGGTGAATCCTGTACCACTTTTAGGGA
GCATTACAGATTATTTTTTAAGATTTGAAATCTATTTCATAAATATCCTCTATCAAAAAA
TCATATTCAACAGATGTTCCCACTTGAGGTTCTAAGCAGTTATGAAAGTGTCAGTGACTT
TTACATGATGCCAGAATAACACCTGTATTTATCAATCCAGACAAATACCAGGCCAATTTT
GCATTAAAAAAACTGATTATTTAAGTCACCTGGCCAAAAATTCAGGAGAAATGAACTGTC
CTTTGTTATAGAGAATCTGAAAGTGGCAGCAAAATTGACAAGAAGGCTCAGGATTTTGGG
GGGGTGCAGTGGGGGAAAAGTAAAAGTATTGATGCTTCTCATACTGGATTTTCAGCTTCT
TGTTACTCATTGCAAATAAAGCAAAAAATAAAACAATAAACTTTGCCATGTCCATACTCT
CCATAGGTTCAGGAAATTGTACCATGTATCATATATGACCATGTTTCCAGTTAAATCAAT
GTAGAGATAATGTAAACTGAAAAGGAAAAAAAAAAAAAAACCTGCAAGATAACGTAACGG
ATGTTTATAAAGGCTGAACTTGTCACTTTATATGAGAATAGTATGCTCTATTTCCTGAAA
GGACTTGGAAATGAAAACTATCGCACCTGCACTTTGTATTCTTGCTTCCTTTTTTAATTA
CTATTATAGTTTTGTCTTTTACAGATGTCGGAAGTTTTTTCTTCTTGTTTAATTCATAAT
CACGGTCACATTTTCTTGGTTTATTCAGGATATTTCCTTCCAATGCATTCCTTTATTTTA
GTATTCATTGTGTCTTTATTTTAGCTCTTGCTGCTGTTTTTTATTTTGTTTACAGAATGA
TTTTTTAAACTGTCCAATGAAATAGTGTTAACCTCAAATAGGATAAATGTGAACCAATAA
AATCCATCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATACAATGAAAACTGTTGGAGAAATATTTAAACACCTCGATGTAGGTACAGTATACAA
TACTCTTGTTGGGGGGACGGGATTTACCAGAATATAGTTTATTCAGTGAATTCCAAAAAA
AGATGAATCTGTCCGTGATATGTGTGTATTATAACTTCTTAATCTCGCTGTTGAGCTGTA
TACATGGTTTAAAAAAAATACATAGTGCTGTTTAACGCTGAGTAAGGCAGCAGCCATTGT
GTATTTGGGCTTTTTAGATAAAATTAGAGCTGTAAGGAAAGCGGAATGCCACAAACACAG
AATGTTCTTAAATGAAATAGGCATTGTCAGCTGGGGTGAATCCTGTACCACTTTTAGGGA
GCATTACAGATTATTTTTTAAGATTTGAAATCTATTTCATAAATATCCTCTATCAAAAAA
TCATATTCAACAGATGTTCCCACTTGAGGTTCTAAGCAGTTATGAAAGTGTCAGTGACTT
TTACATGATGCCAGAATAACACCTGTATTTATCAATCCAGACAAATACCAGGCCAATTTT
GCATTAAAAAAACTGATTATTTAAGTCACCTGGCCAAAAATTCAGGAGAAATGAACTGTC
CTTTGTTATAGAGAATCTGAAAGTGGCAGCAAAATTGACAAGAAGGCTCAGGATTTTGGG
GGGGTGCAGTGGGGGAAAAGTAAAAGTATTGATGCTTCTCATACTGGATTTTCAGCTTCT
TGTTACTCATTGCAAATAAAGCAAAAAATAAAACAATAAACTTTGCCATGTCCATACTCT
CCATAGGTTCAGGAAATTGTACCATGTATCATATATGACCATGTTTCCAGTTAAATCAAT
GTAGAGATAATGTAAACTGAAAAGGAAAAAAAAAAAAAAACCTGCAAGATAACGTAACGG
ATGTTTATAAAGGCTGAACTTGTCACTTTATATGAGAATAGTATGCTCTATTTCCTGAAA
GGACTTGGAAATGAAAACTATCGCACCTGCACTTTGTATTCTTGCTTCCTTTTTTAATTA
CTATTATAGTTTTGTCTTTTACAGATGTCGGAAGTTTTTTCTTCTTGTTTAATTCATAAT
CACGGTCACATTTTCTTGGTTTATTCAGGATATTTCCTTCCAATGCATTCCTTTATTTTA
GTATTCATTGTGTCTTTATTTTAGCTCTTGCTGCTGTTTTTTATTTTGTTTACAGAATGA
TTTTTTAAACTGTCCAATGAAATAGTGTTAACCTCAAATAGGATAAATGTGAACCAATAA
AATCCATCAGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1267, gnl|bosTau2|chr17 (10526625-10525384)
               

               
               1-1267, gnl|Hg17|chr4 (141900815-141899552)
               

               
               1-1267, gnl|Mm7|chr8 (81840656-81841843)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1267, gnl|bosTau2|chr17 (10526625-10525384)
               

               
               1-1267, gnl|Hg17|chr4 (141900815-141899552)
               

               
               1-1267, gnl|Mm7|chr8 (81840656-81841843)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-1267, gnl\|bosTau2\|chr17 (10526625-10525384)
	1-1267, gnl\|Hg17\|chr4 (141900815-141899552)
	1-1267, gnl\|Mm7\|chr8 (81840656-81841843)

	fco (0.628832)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	ece (0.229305)
	hea (0.204499)
	sag (0.182715)
	gul (0.177588)
	isp (0.150376)
	liv (0.146284)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)
	ldo (0.0970026)