Ss1.1-Pig4-TMW8016J08.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGAGGAGGGCCCGACGGAGCCCGGCCGCGACAGGGCCGCTGCGGAGAGGGTCACTCAC GACGTCAGAGCTGTCTGCTCCCAGGAGGCGCTGACGGGGCCCTGCCGGGCCGTGATGCCC CGGTGGTACTTCGACCTCTCCAAGGGGAAGTGCGTGCGCTTTATATATGGCGGCTGCGGA GGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATT CCCCCAACTCCTCTGCCAACCAATGATGTCGATGTGTATTTCGAGACCTCTGCAGATGAC AACGAGCATGCGCGCTTCCAGAAGGCCAAGGAGCAGCTGGAAATCCGGCACCGCAACCGG ATGGACAGGGTGAAGAAGGAATGGGAAGAGGCTGAACTTCAAGCAAAGAATCTCCCCAAA GCAGAGAGGCAGACTCTCATCCAGCACTTCCAAGCCATGGTGAAAGCCCTGGAGAAGGAA GCAGCCAGCGAGAAGCAGCAGCTGGTGGAAACCCACCTCGCGCGGGTGGAGGCCATGCTC AACGACCGCCGCCGGGTGGCGCTGGAGAACTACTTAGCGGCCCTGCAGGCTGACCCTCCA CGGCCTCATCGCATTCTCCAAGCCTTGCGGCGTTACGTCCGTGCTGAGAACAAAGATCGC CTGCACACCATCCGTCACTACCAGCACGTGTTGGCTGTCGACCCAGAAAAGGCAGCCCAG ATGAAGTCCCAGGTGATGACACATCTCCATGTGATTGAAGAAAGGAGGAACCAGAGCCTC TCCTTGCTGTACAAAGTACCTTACGTGGCCCAGGAAATCCAGGAGGAAATCGATGAGCTG CTTCAAGAACAGCGAGCAGACATGGACCAGTTCACTGCCTCCATCTCGGAGACCCCCGTG GACGTCCGGGTGAGCTCGGAAGAGAGTGACGAGATGCCACCGTTGTATCCTCTCCATCCT TTCCCATCCTTACCTGAGAATGAAGGATCTGCCCTGGGAGAGCAGGACGGGGGGCTGATT GGTGCCGAGGAGAAAGTGATTAACAGTAAGAAGAAAGTGGATGAAAACATGGTCATTGAC GAGACCCTGGATGTGAAGGAGATGATCTTCAACGCTGAGAGAGTCGGAGGCCTCGAGGAG GCGCCGGAATCCACGGGGCCGCTGCGGGAGGACTTCGGTCTGAGCAGCAGCGCCCTCATC GGCCTGCTGGTCATCGCAGTGGCCATCGCCACGGTCATTGTCATCAGCCTGGTGATGCTT CGGAAGAGGCAGTACGGCACCATCAGCCATGGGATCGTGGAGGTCGACCCAATGCTCACC CCAGAAGAACGTCACCTGAACAAGATGCAGAACCATGGTTATGAAAACCCAACCTACAAA TACCTGGAGCAGATGCAGATTTAAGCAGGAGAAGTGCGGCACCCGGTTGCAGTGGGTGGG GCTGAGGAGGGCAGCAGAGGTCAAGTTTTGGATCGACTACTGACCAACAGTTATTTCCAG AGGATTCATCTTACACTCAGACCTCCTGGATCATTAAGACTGTAAAGTACTACTGTAGAA TCACAATCTCCATTCTTTTAAATGGGTGAAAAAAAATGTTAATATAACAATATATGATAT ATAAACCTTAAATGAAATGAAAAAATGATCTATTGCAGATATTTGACTGATGTAGTTTTC TTTTTTAAATTAATCAGGAATCCCACTTCTATTGTATTGTCTCACACGTGCTCTCCGTAG CAATGGCAAATGTTGATTTTTCAGTGATAGACTGTACATGCTCTATGCAGGCCATTTGTT CCAGCTGCATTGTATAAATCTGCCCTTTAAGGCTCACTGTCCTGGTTTTTATATTGGAAA AGGAAGAGGCAGTATTCCCTTTTAAATGAGCTTTCAGAACGTTGCTGAGGAGCTACCTGA AATAGGAGCCATCATTGACCCTTGCAGCTCATCAGGCTCCCCTCTCAAAATTCCTTTGAA GGACCAGTTTCTTGGAAGTCTGGTGCTCCCACCTCTAGATACCGGGGTGTCTCCACACAA GTCCCATCACCAAGGAGGCGCTCAAAGTGAGCATTTGAGTTCCAGCATCTTGCAACAAGC CCTGTGTACACCGATTAAGGCCACCATCGCGTTCCTTCTGAATCCAGCTCTTCCGCAGAG ATTAGCCTGTAGTTTGTACATGACGTTCTTCCACCGTCTGCCGTTGACTCACTGTAGCTT TTTACTATTCACTCCCCTCCCACGTAATATCCAGATGTGCTGATGCCTCCAAATGGACTA GACAAATTCCTGAAATTAAAATAAATTGGGTGATTGGTTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGAGGAGGGCCCGACGGAGCCCGGCCGCGACAGGGCCGCTGCGGAGAGGGTCACTCAC GACGTCAGAGCTGTCTGCTCCCAGGAGGCGCTGACGGGGCCCTGCCGGGCCGTGATGCCC CGGTGGTACTTCGACCTCTCCAAGGGGAAGTGCGTGCGCTTTATATATGGCGGCTGCGGA GGCAACAGGAACAATTTTGAGTCTGAGGATTATTGTATGGCTGTGTGTAAAGCGATGATT CCCCCAACTCCTCTGCCAACCAATGATGTCGATGTGTATTTCGAGACCTCTGCAGATGAC AACGAGCATGCGCGCTTCCAGAAGGCCAAGGAGCAGCTGGAAATCCGGCACCGCAACCGG ATGGACAGGGTGAAGAAGGAATGGGAAGAGGCTGAACTTCAAGCAAAGAATCTCCCCAAA GCAGAGAGGCAGACTCTCATCCAGCACTTCCAAGCCATGGTGAAAGCCCTGGAGAAGGAA GCAGCCAGCGAGAAGCAGCAGCTGGTGGAAACCCACCTCGCGCGGGTGGAGGCCATGCTC AACGACCGCCGCCGGGTGGCGCTGGAGAACTACTTAGCGGCCCTGCAGGCTGACCCTCCA CGGCCTCATCGCATTCTCCAAGCCTTGCGGCGTTACGTCCGTGCTGAGAACAAAGATCGC CTGCACACCATCCGTCACTACCAGCACGTGTTGGCTGTCGACCCAGAAAAGGCAGCCCAG ATGAAGTCCCAGGTGATGACACATCTCCATGTGATTGAAGAAAGGAGGAACCAGAGCCTC TCCTTGCTGTACAAAGTACCTTACGTGGCCCAGGAAATCCAGGAGGAAATCGATGAGCTG CTTCAAGAACAGCGAGCAGACATGGACCAGTTCACTGCCTCCATCTCGGAGACCCCCGTG GACGTCCGGGTGAGCTCGGAAGAGAGTGACGAGATGCCACCGTTGTATCCTCTCCATCCT TTCCCATCCTTACCTGAGAATGAAGGATCTGCCCTGGGAGAGCAGGACGGGGGGCTGATT GGTGCCGAGGAGAAAGTGATTAACAGTAAGAAGAAAGTGGATGAAAACATGGTCATTGAC GAGACCCTGGATGTGAAGGAGATGATCTTCAACGCTGAGAGAGTCGGAGGCCTCGAGGAG GCGCCGGAATCCACGGGGCCGCTGCGGGAGGACTTCGGTCTGAGCAGCAGCGCCCTCATC GGCCTGCTGGTCATCGCAGTGGCCATCGCCACGGTCATTGTCATCAGCCTGGTGATGCTT CGGAAGAGGCAGTACGGCACCATCAGCCATGGGATCGTGGAGGTCGACCCAATGCTCACC CCAGAAGAACGTCACCTGAACAAGATGCAGAACCATGGTTATGAAAACCCAACCTACAAA TACCTGGAGCAGATGCAGATTTAAGCAGGAGAAGTGCGGCACCCGGTTGCAGTGGGTGGG GCTGAGGAGGGCAGCAGAGGTCAAGTTTTGGATCGACTACTGACCAACAGTTATTTCCAG AGGATTCATCTTACACTCAGACCTCCTGGATCATTAAGACTGTAAAGTACTACTGTAGAA TCACAATCTCCATTCTTTTAAATGGGTGAAAAAAAATGTTAATATAACAATATATGATAT ATAAACCTTAAATGAAATGAAAAAATGATCTATTGCAGATATTTGACTGATGTAGTTTTC TTTTTTAAATTAATCAGGAATCCCACTTCTATTGTATTGTCTCACACGTGCTCTCCGTAG CAATGGCAAATGTTGATTTTTCAGTGATAGACTGTACATGCTCTATGCAGGCCATTTGTT CCAGCTGCATTGTATAAATCTGCCCTTTAAGGCTCACTGTCCTGGTTTTTATATTGGAAA AGGAAGAGGCAGTATTCCCTTTTAAATGAGCTTTCAGAACGTTGCTGAGGAGCTACCTGA AATAGGAGCCATCATTGACCCTTGCAGCTCATCAGGCTCCCCTCTCAAAATTCCTTTGAA GGACCAGTTTCTTGGAAGTCTGGTGCTCCCACCTCTAGATACCGGGGTGTCTCCACACAA GTCCCATCACCAAGGAGGCGCTCAAAGTGAGCATTTGAGTTCCAGCATCTTGCAACAAGC CCTGTGTACACCGATTAAGGCCACCATCGCGTTCCTTCTGAATCCAGCTCTTCCGCAGAG ATTAGCCTGTAGTTTGTACATGACGTTCTTCCACCGTCTGCCGTTGACTCACTGTAGCTT TTTACTATTCACTCCCCTCCCACGTAATATCCAGATGTGCTGATGCCTCCAAATGGACTA GACAAATTCCTGAAATTAAAATAAATTGGGTGATTGGTTAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 442-1274, + strand, RNAz p=0.992759 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 442-1274, + strand, RNAz p=0.992759 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 66-238, gnl|bosTau2|chr29 (29370946-29371118) | |
| 66-238, gnl|canFam2|chr5 (7728679-7728473) | |
| 66-238, gnl|danRer3|chrNA (181061541-181061365) | |
| 66-238, gnl|dasNov1|scaffold_2494 (38285-38443) | |
| 66-238, gnl|echTel1|scaffold_294121 (4879-4667) | |
| 66-238, gnl|fr1|chrUn (65984276-65984098) | |
| 66-238, gnl|galGal2|chr24 (1439562-1439348) | |
| 66-238, gnl|hg17|chr11 (129498713-129498924) | |
| 66-238, gnl|Hg17|chr11 (129498712-129498884) | |
| 66-238, gnl|loxAfr1|scaffold_59963 (11998-12210) | |
| 66-238, gnl|mm7|chr9 (31067408-31067197) | |
| 66-238, gnl|Mm7|chr9 (31067407-31067235) | |
| 66-238, gnl|monDom2|scaffold_15 (19052831-19053044) | |
| 66-238, gnl|oryCun1|scaffold_202416 (149620-149431) | |
| 66-238, gnl|panTro1|chr9_random (8430951-8430755) | |
| 66-238, gnl|rheMac2|chr14 (128187385-128187596) | |
| 66-238, gnl|rn3|chr8_random (306766-306555) | |
| 66-238, gnl|tetNig1|chr16 (5153679-5153467) | |
| 66-238, gnl|xenTro1|scaffold_1314 (77316-77495) | |
| 73-228, gnl|bosTau2|chr1 (8279309-8279154) | |
| 73-228, gnl|canFam2|chr31 (24472647-24472818) | |
| 73-228, gnl|danRer3|chrNA (181061366-181061537) | |
| 73-228, gnl|dasNov1|scaffold_11794 (15467-15296) | |
| 73-228, gnl|echTel1|scaffold_294121 (4701-4872) | |
| 73-228, gnl|fr1|chrUn (284715315-284715485) | |
| 73-228, gnl|galGal2|chr1 (96456183-96456354) | |
| 73-228, gnl|hg17|chr21 (26294196-26294367) | |
| 73-228, gnl|Hg17|chr21 (26294366-26294211) | |
| 73-228, gnl|loxAfr1|scaffold_59963 (12172-12005) | |
| 73-228, gnl|mm7|chr16 (85043002-85043173) | |
| 73-228, gnl|Mm7|chr16 (85043172-85043017) | |
| 73-228, gnl|monDom2|scaffold_29 (6592121-6591950) | |
| 73-228, gnl|oryCun1|scaffold_202416 (149449-149620) | |
| 73-228, gnl|panTro1|chr22 (26289377-26289548) | |
| 73-228, gnl|rheMac2|chr3 (20662100-20661929) | |
| 73-228, gnl|rn3|chr11 (24544121-24544292) | |
| 73-228, gnl|tetNig1|chr2 (9354830-9354659) | |
| 73-228, gnl|xenTro1|scaffold_114 (935488-935659) | |
| 442-603, gnl|bosTau2|chr1 (8251970-8251809) | |
| 442-603, gnl|canFam2|chr5 (7723005-7722875) | |
| 442-603, gnl|danRer3|chrNA (181051630-181051500) | |
| 442-603, gnl|dasNov1|scaffold_2494 (38635-38763) | |
| 442-603, gnl|echTel1|scaffold_207374 (2650-2780) | |
| 442-603, gnl|fr1|chrUn (65982401-65982271) | |
| 442-603, gnl|galGal2|chr24 (1435823-1435693) | |
| 442-603, gnl|hg17|chr11 (129504152-129504282) | |
| 442-603, gnl|Hg17|chr21 (26269415-26269254) | |
| 442-603, gnl|loxAfr1|scaffold_10559 (9198-9068) | |
| 442-603, gnl|Mm7|chr16 (85024445-85024284) | |
| 442-603, gnl|mm7|chr9 (31061483-31061353) | |
| 442-603, gnl|monDom2|scaffold_15 (19058726-19058856) | |
| 442-603, gnl|oryCun1|scaffold_208798 (165813-165683) | |
| 442-603, gnl|panTro1|chr9_random (8425529-8425399) | |
| 442-603, gnl|rheMac2|chr14 (128192839-128192969) | |
| 442-603, gnl|rn3|chr8_random (301309-301179) | |
| 442-603, gnl|tetNig1|chr16 (5152180-5152050) | |
| 442-603, gnl|xenTro1|scaffold_1314 (82250-82380) | |
| 832-986, gnl|bosTau2|chr29 (29381653-29381807) | |
| 832-986, gnl|Hg17|chr11 (129510667-129510821) | |
| 832-986, gnl|Mm7|chr9 (31057411-31057257) | |
| 1156-1304, gnl|bosTau2|chr29 (29387090-29387238) | |
| 1156-1304, gnl|Hg17|chr11 (129517033-129517181) | |
| 1156-1304, gnl|Mm7|chr9 (31051546-31051398) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-238, gnl|bosTau2|chr29 (29370946-29371118) | |
| 66-238, gnl|canFam2|chr5 (7728679-7728473) | |
| 66-238, gnl|danRer3|chrNA (181061541-181061365) | |
| 66-238, gnl|dasNov1|scaffold_2494 (38285-38443) | |
| 66-238, gnl|echTel1|scaffold_294121 (4879-4667) | |
| 66-238, gnl|fr1|chrUn (65984276-65984098) | |
| 66-238, gnl|galGal2|chr24 (1439562-1439348) | |
| 66-238, gnl|hg17|chr11 (129498713-129498924) | |
| 66-238, gnl|Hg17|chr11 (129498712-129498884) | |
| 66-238, gnl|loxAfr1|scaffold_59963 (11998-12210) | |
| 66-238, gnl|mm7|chr9 (31067408-31067197) | |
| 66-238, gnl|Mm7|chr9 (31067407-31067235) | |
| 66-238, gnl|monDom2|scaffold_15 (19052831-19053044) | |
| 66-238, gnl|oryCun1|scaffold_202416 (149620-149431) | |
| 66-238, gnl|panTro1|chr9_random (8430951-8430755) | |
| 66-238, gnl|rheMac2|chr14 (128187385-128187596) | |
| 66-238, gnl|rn3|chr8_random (306766-306555) | |
| 66-238, gnl|tetNig1|chr16 (5153679-5153467) | |
| 66-238, gnl|xenTro1|scaffold_1314 (77316-77495) | |
| 73-228, gnl|bosTau2|chr1 (8279309-8279154) | |
| 73-228, gnl|canFam2|chr31 (24472647-24472818) | |
| 73-228, gnl|danRer3|chrNA (181061366-181061537) | |
| 73-228, gnl|dasNov1|scaffold_11794 (15467-15296) | |
| 73-228, gnl|echTel1|scaffold_294121 (4701-4872) | |
| 73-228, gnl|fr1|chrUn (284715315-284715485) | |
| 73-228, gnl|galGal2|chr1 (96456183-96456354) | |
| 73-228, gnl|hg17|chr21 (26294196-26294367) | |
| 73-228, gnl|Hg17|chr21 (26294366-26294211) | |
| 73-228, gnl|loxAfr1|scaffold_59963 (12172-12005) | |
| 73-228, gnl|mm7|chr16 (85043002-85043173) | |
| 73-228, gnl|Mm7|chr16 (85043172-85043017) | |
| 73-228, gnl|monDom2|scaffold_29 (6592121-6591950) | |
| 73-228, gnl|oryCun1|scaffold_202416 (149449-149620) | |
| 73-228, gnl|panTro1|chr22 (26289377-26289548) | |
| 73-228, gnl|rheMac2|chr3 (20662100-20661929) | |
| 73-228, gnl|rn3|chr11 (24544121-24544292) | |
| 73-228, gnl|tetNig1|chr2 (9354830-9354659) | |
| 73-228, gnl|xenTro1|scaffold_114 (935488-935659) | |
| 442-603, gnl|bosTau2|chr1 (8251970-8251809) | |
| 442-603, gnl|canFam2|chr5 (7723005-7722875) | |
| 442-603, gnl|danRer3|chrNA (181051630-181051500) | |
| 442-603, gnl|dasNov1|scaffold_2494 (38635-38763) | |
| 442-603, gnl|echTel1|scaffold_207374 (2650-2780) | |
| 442-603, gnl|fr1|chrUn (65982401-65982271) | |
| 442-603, gnl|galGal2|chr24 (1435823-1435693) | |
| 442-603, gnl|hg17|chr11 (129504152-129504282) | |
| 442-603, gnl|Hg17|chr21 (26269415-26269254) | |
| 442-603, gnl|loxAfr1|scaffold_10559 (9198-9068) | |
| 442-603, gnl|Mm7|chr16 (85024445-85024284) | |
| 442-603, gnl|mm7|chr9 (31061483-31061353) | |
| 442-603, gnl|monDom2|scaffold_15 (19058726-19058856) | |
| 442-603, gnl|oryCun1|scaffold_208798 (165813-165683) | |
| 442-603, gnl|panTro1|chr9_random (8425529-8425399) | |
| 442-603, gnl|rheMac2|chr14 (128192839-128192969) | |
| 442-603, gnl|rn3|chr8_random (301309-301179) | |
| 442-603, gnl|tetNig1|chr16 (5152180-5152050) | |
| 442-603, gnl|xenTro1|scaffold_1314 (82250-82380) | |
| 832-986, gnl|bosTau2|chr29 (29381653-29381807) | |
| 832-986, gnl|Hg17|chr11 (129510667-129510821) | |
| 832-986, gnl|Mm7|chr9 (31057411-31057257) | |
| 1156-1304, gnl|bosTau2|chr29 (29387090-29387238) | |
| 1156-1304, gnl|Hg17|chr11 (129517033-129517181) | |
| 1156-1304, gnl|Mm7|chr9 (31051546-31051398) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cki (0.991408) | |
| cte (0.87822) | |
| sto (0.719295) | |
| cst (0.700182) | |
| rec (0.519211) | |
| cje (0.330469) | |
| cov (0.264306) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cli (0.152812) | |
| lin (0.145603) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eep (0.122564) | |
| eje (0.0988338) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.991408) | |
| cte (0.87822) | |
| sto (0.719295) | |
| cst (0.700182) | |
| rec (0.519211) | |
| cje (0.330469) | |
| cov (0.264306) | |
| jej (0.197844) | |
| col (0.195008) | |
| ill (0.175593) | |
| cut (0.169924) | |
| cli (0.152812) | |
| lin (0.145603) | |
| che (0.136314) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eep (0.122564) | |
| eje (0.0988338) |