Non-Coding RNA Search

Ss1.1-Pig4-TMW8016K10.5

Sequence:


               
               GTGGACTGCATTTAAATTTGATTTCCATCTAAATGTTGCTAAGATATAAGAGAAGTCTCA
CTTTGTCTTGTACTTCTGTGTTTTTTTTTTTTTTTTTTTTTTTAAATTTTGGCTAGAGTG
TCCACTGTCCCAATCAAAGAATTACAGTACACATCGTCCCCAGAATCCGTAAGTGTATTC
CTGGCCCACTCTGTATTAGCTTAGTAGAATTAACCATTACAGACACATTTGACCCATTCA
CAGTATTTAAAAAAAGAATTTGCATTTCTATACCTTCTAGGAGATAGATTCTTTTCATGT
TCCATTGTATGCAGGAGCATATTTTGCTGGTTTGAAAGAGTATGATGCATACAGTTTTCT
AGCAATTTTCTTTGTTTCTTTTTACAGCATTGTCTGTGCTGTACTCTTGCTGATGGCTGC
TAGATTTTAATTTATTTGTTTCCCTACTTGATAACATTAGTGATTCTGATTTCAGTTTTT
CATTTGTTTTGCTTTTGTTTTTTTTCCCTAATGTAACATTGGTGAAGGATCCAGGAATAT
GACACAAAGGTGGAATAAACATTAATTTTATGCATTCTTTGGTAATATTTTTGGTTTTTC
GTAACTACAAAGCTTTGCTACAAGTTTATGCATTTCATTCAAATCAGTGATCTATGTTTG
TGTGATTTCCTAAACATAATTGTGGATTATAAAAAAATGTAACATCATAATTACATTCCT
AATTAGAATTAGTATGTCTGTTTTTGTATCTTTATGCTGTATTTTAACACTTTGTATTAC
TTAGGTTATTTTGCTTTGGTTAAAAAATGGCTCAAGTAGAGAAGCGGTCCCATTCACATT
AAGACAGTGTACAAAACTGTAAATAAAATGTGTACAGTGAATTGTCTTTTAGACAACTAG
ATTTGTCCTTTTATTTCTCCATCTCTAGAAGGAATTTGTACTCCTATTGCAAGGCAGTCT
CTATTATATCTTCTCTTGTAGTGTCTTCCACGTGAACAGCATAAGTTTGGAGCATTAGTT
TGATTATGTTATTTCAATTTTTAATAAATTGAATAGGTAGCATCATATATATGGAATTAA
ATGGATGTGGCTATCTTTGTTTTTTATAAAGTAAGGCGCAATCCTTCAGTCTTAGGTAAA
TAATGTACTCAATATGTTAAAACTCATGAGAATTGCAACCTTGGTGTATCACCATTTGAT
TGGTAAAAATAGTAGTTGTAAAACTTGGTTGCTGAATTGAGATTTTTTGTGTGTCAAAAT
GATAGCATAGGGAAAGAATTATAGGTGGTGGGGGCGTATGCATTAAGAATTTTGTTAGTA
TTGCTGTCTAAATAGAATTGGAATAAACAGGTTATAAAGACTTGTACTTATAATGATTAA
TTGGTGTAGTATGGTTTTATGTAAACTTGAAAACTTGATCTCTTTGTAGGCATCATTTGA
AAACAGTTGTCTATAATACATAATTGTATATTCTAGATCCTATAAAATGAAATATAGCTA
TATAGTAGACAAAAGGATAAGCTGAACTATAGGTAGAATAAAAACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACTGCATTTAAATTTGATTTCCATCTAAATGTTGCTAAGATATAAGAGAAGTCTCA
CTTTGTCTTGTACTTCTGTGTTTTTTTTTTTTTTTTTTTTTTTAAATTTTGGCTAGAGTG
TCCACTGTCCCAATCAAAGAATTACAGTACACATCGTCCCCAGAATCCGTAAGTGTATTC
CTGGCCCACTCTGTATTAGCTTAGTAGAATTAACCATTACAGACACATTTGACCCATTCA
CAGTATTTAAAAAAAGAATTTGCATTTCTATACCTTCTAGGAGATAGATTCTTTTCATGT
TCCATTGTATGCAGGAGCATATTTTGCTGGTTTGAAAGAGTATGATGCATACAGTTTTCT
AGCAATTTTCTTTGTTTCTTTTTACAGCATTGTCTGTGCTGTACTCTTGCTGATGGCTGC
TAGATTTTAATTTATTTGTTTCCCTACTTGATAACATTAGTGATTCTGATTTCAGTTTTT
CATTTGTTTTGCTTTTGTTTTTTTTCCCTAATGTAACATTGGTGAAGGATCCAGGAATAT
GACACAAAGGTGGAATAAACATTAATTTTATGCATTCTTTGGTAATATTTTTGGTTTTTC
GTAACTACAAAGCTTTGCTACAAGTTTATGCATTTCATTCAAATCAGTGATCTATGTTTG
TGTGATTTCCTAAACATAATTGTGGATTATAAAAAAATGTAACATCATAATTACATTCCT
AATTAGAATTAGTATGTCTGTTTTTGTATCTTTATGCTGTATTTTAACACTTTGTATTAC
TTAGGTTATTTTGCTTTGGTTAAAAAATGGCTCAAGTAGAGAAGCGGTCCCATTCACATT
AAGACAGTGTACAAAACTGTAAATAAAATGTGTACAGTGAATTGTCTTTTAGACAACTAG
ATTTGTCCTTTTATTTCTCCATCTCTAGAAGGAATTTGTACTCCTATTGCAAGGCAGTCT
CTATTATATCTTCTCTTGTAGTGTCTTCCACGTGAACAGCATAAGTTTGGAGCATTAGTT
TGATTATGTTATTTCAATTTTTAATAAATTGAATAGGTAGCATCATATATATGGAATTAA
ATGGATGTGGCTATCTTTGTTTTTTATAAAGTAAGGCGCAATCCTTCAGTCTTAGGTAAA
TAATGTACTCAATATGTTAAAACTCATGAGAATTGCAACCTTGGTGTATCACCATTTGAT
TGGTAAAAATAGTAGTTGTAAAACTTGGTTGCTGAATTGAGATTTTTTGTGTGTCAAAAT
GATAGCATAGGGAAAGAATTATAGGTGGTGGGGGCGTATGCATTAAGAATTTTGTTAGTA
TTGCTGTCTAAATAGAATTGGAATAAACAGGTTATAAAGACTTGTACTTATAATGATTAA
TTGGTGTAGTATGGTTTTATGTAAACTTGAAAACTTGATCTCTTTGTAGGCATCATTTGA
AAACAGTTGTCTATAATACATAATTGTATATTCTAGATCCTATAAAATGAAATATAGCTA
TATAGTAGACAAAAGGATAAGCTGAACTATAGGTAGAATAAAAACCAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               287-446, + strand, RNAz p=0.943282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-446, + strand, RNAz p=0.943282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-886, gnl|bosTau2|chr22 (44372310-44373222)
               

               
               1-886, gnl|Hg17|chr17 (44856543-44855658)
               

               
               1-886, gnl|Mm7|chrX (57180706-57181570)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-886, gnl|bosTau2|chr22 (44372310-44373222)
               

               
               1-886, gnl|Hg17|chr17 (44856543-44855658)
               

               
               1-886, gnl|Mm7|chrX (57180706-57181570)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	1-886, gnl\|bosTau2\|chr22 (44372310-44373222)
	1-886, gnl\|Hg17\|chr17 (44856543-44855658)
	1-886, gnl\|Mm7\|chrX (57180706-57181570)

	lin (0.291206)
	fce (0.271592)
	ssp (0.271039)
	ova (0.258264)
	mgp (0.230681)
	ecc (0.23007)
	hea (0.204499)
	col (0.195008)
	fty (0.17584)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lnt (0.142308)
	ret (0.128733)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	cbl (0.114797)
	nbm (0.0993246)