Non-Coding RNA Search

Ss1.1-Pig4-TMW8016K11.3

Sequence:


               
               TACCTACTGATGTCATGACGACTGTGTTCAAGGTTGGAGCAAAAACGGACAAAGGCTGGT
CGTTCCTCTTAAGCAAATATGTCTCTGGAGGCTCTGAAGCAGAGAAGAATAAAATACTTG
AAGCTCTTGCCAGCTCAGAGGATGTATGGAAACTTTACTGGTATGAAACCAACAAAGGAG
TGACCTGTAGAAACCAGAAGCATAAAACATTGTGCTTTTCGTGTGGGGAAGCCCCCTTTT
CCTCCCTGTGCTCACAGGCCACACCTGACTTCAGCGGTGTGGTGAGGGGCCTGCACATGC
AGGGCTTCACCTCAGGACCCGTACCCATAGGCAGACAGTGCTTTTCCCAGCAGGGATTGG
AGATGCTGAGGGTCACAGCGCTGCTTTCTGCTTAAAACGTTTTTATCCCCTTGGCACGTT
ATCTTTCATTCCACAGTTAGGGCTTCATTCTTTTTGGTCAAGGCATTGTTCTGTCCTGGC
TGTCATTTTGGAAATGCAGCCACTTGAGAAAAAGACCGTGTGTGGAAGCTTATGCATGGC
CTTAATGTGAATTTGGCAGACTTTTCCTTTTTCATGCTCAGCTTCAGAAGACCCAGACAT
GGGGGCAAGGACATTGAGTAGCGCCCCCTGACAGGAAGAACAGGCAGGGGCAGGGGAGAG
GAGCTCTAAGTAGCCAAGAGAAATGTGCAGTATCTTAGAAGTCAGTACCAGGAAGAGGGG
TGGAGGGAGGTGTTTGGGTCTTGTTACTTCTCTTGTATAATTTTGCTCAGATAAATCACA
AGAGTGTCCCAGAAATATTTTCACTTTCCCATACCCACTCTCCAAAGGATACATTGTAAA
TAGTCATTTTCTTTAAAGTAGTAGCCAGCCTCTGATCCAAGCATATAGAGAAAAGTTTTT
GTTTTAAAATTAGTAATAATTTTGTTAAGCTAGTTATACACTGATCAGTTGCCACCGTAA
AGTATTTAAGCAATACCTAAGAAGATGGACTAAAACATGAAAGTATCCCTCGTTTGATCC
TTCACTTCTGCTCTCATCCACTTCTCTGTTAACAGTGTCAGTCATGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCTACTGATGTCATGACGACTGTGTTCAAGGTTGGAGCAAAAACGGACAAAGGCTGGT
CGTTCCTCTTAAGCAAATATGTCTCTGGAGGCTCTGAAGCAGAGAAGAATAAAATACTTG
AAGCTCTTGCCAGCTCAGAGGATGTATGGAAACTTTACTGGTATGAAACCAACAAAGGAG
TGACCTGTAGAAACCAGAAGCATAAAACATTGTGCTTTTCGTGTGGGGAAGCCCCCTTTT
CCTCCCTGTGCTCACAGGCCACACCTGACTTCAGCGGTGTGGTGAGGGGCCTGCACATGC
AGGGCTTCACCTCAGGACCCGTACCCATAGGCAGACAGTGCTTTTCCCAGCAGGGATTGG
AGATGCTGAGGGTCACAGCGCTGCTTTCTGCTTAAAACGTTTTTATCCCCTTGGCACGTT
ATCTTTCATTCCACAGTTAGGGCTTCATTCTTTTTGGTCAAGGCATTGTTCTGTCCTGGC
TGTCATTTTGGAAATGCAGCCACTTGAGAAAAAGACCGTGTGTGGAAGCTTATGCATGGC
CTTAATGTGAATTTGGCAGACTTTTCCTTTTTCATGCTCAGCTTCAGAAGACCCAGACAT
GGGGGCAAGGACATTGAGTAGCGCCCCCTGACAGGAAGAACAGGCAGGGGCAGGGGAGAG
GAGCTCTAAGTAGCCAAGAGAAATGTGCAGTATCTTAGAAGTCAGTACCAGGAAGAGGGG
TGGAGGGAGGTGTTTGGGTCTTGTTACTTCTCTTGTATAATTTTGCTCAGATAAATCACA
AGAGTGTCCCAGAAATATTTTCACTTTCCCATACCCACTCTCCAAAGGATACATTGTAAA
TAGTCATTTTCTTTAAAGTAGTAGCCAGCCTCTGATCCAAGCATATAGAGAAAAGTTTTT
GTTTTAAAATTAGTAATAATTTTGTTAAGCTAGTTATACACTGATCAGTTGCCACCGTAA
AGTATTTAAGCAATACCTAAGAAGATGGACTAAAACATGAAAGTATCCCTCGTTTGATCC
TTCACTTCTGCTCTCATCCACTTCTCTGTTAACAGTGTCAGTCATGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               147-261, - strand, RNAz p=0.544554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-261, - strand, RNAz p=0.544554

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-287, gnl|bosTau2|chr7 (59914378-59914666)
               

               
               3-287, gnl|canFam2|chr3 (15567230-15567039)
               

               
               3-287, gnl|danRer3|chrNA (233743181-233743008)
               

               
               3-287, gnl|dasNov1|scaffold_4948 (52405-52214)
               

               
               3-287, gnl|echTel1|scaffold_314588 (42224-42415)
               

               
               3-287, gnl|galGal2|chrZ (23661797-23661607)
               

               
               3-287, gnl|hg17|chr5 (96385973-96386163)
               

               
               3-287, gnl|loxAfr1|scaffold_62441 (6919-6728)
               

               
               3-287, gnl|mm7|chr17 (15708196-15708005)
               

               
               3-287, gnl|monDom2|scaffold_93 (271761-271956)
               

               
               3-287, gnl|oryCun1|scaffold_205569 (83236-83436)
               

               
               3-287, gnl|panTro1|chr4 (102150527-102150717)
               

               
               3-287, gnl|rheMac2|chr6 (93235931-93236122)
               

               
               3-287, gnl|rn3|chr1 (56075279-56075088)
               

               
               3-287, gnl|xenTro1|scaffold_45 (1163006-1162838)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-287, gnl|bosTau2|chr7 (59914378-59914666)
               

               
               3-287, gnl|canFam2|chr3 (15567230-15567039)
               

               
               3-287, gnl|danRer3|chrNA (233743181-233743008)
               

               
               3-287, gnl|dasNov1|scaffold_4948 (52405-52214)
               

               
               3-287, gnl|echTel1|scaffold_314588 (42224-42415)
               

               
               3-287, gnl|galGal2|chrZ (23661797-23661607)
               

               
               3-287, gnl|hg17|chr5 (96385973-96386163)
               

               
               3-287, gnl|loxAfr1|scaffold_62441 (6919-6728)
               

               
               3-287, gnl|mm7|chr17 (15708196-15708005)
               

               
               3-287, gnl|monDom2|scaffold_93 (271761-271956)
               

               
               3-287, gnl|oryCun1|scaffold_205569 (83236-83436)
               

               
               3-287, gnl|panTro1|chr4 (102150527-102150717)
               

               
               3-287, gnl|rheMac2|chr6 (93235931-93236122)
               

               
               3-287, gnl|rn3|chr1 (56075279-56075088)
               

               
               3-287, gnl|xenTro1|scaffold_45 (1163006-1162838)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	3-287, gnl\|bosTau2\|chr7 (59914378-59914666)
	3-287, gnl\|canFam2\|chr3 (15567230-15567039)
	3-287, gnl\|danRer3\|chrNA (233743181-233743008)
	3-287, gnl\|dasNov1\|scaffold_4948 (52405-52214)
	3-287, gnl\|echTel1\|scaffold_314588 (42224-42415)
	3-287, gnl\|galGal2\|chrZ (23661797-23661607)
	3-287, gnl\|hg17\|chr5 (96385973-96386163)
	3-287, gnl\|loxAfr1\|scaffold_62441 (6919-6728)
	3-287, gnl\|mm7\|chr17 (15708196-15708005)
	3-287, gnl\|monDom2\|scaffold_93 (271761-271956)
	3-287, gnl\|oryCun1\|scaffold_205569 (83236-83436)
	3-287, gnl\|panTro1\|chr4 (102150527-102150717)
	3-287, gnl\|rheMac2\|chr6 (93235931-93236122)
	3-287, gnl\|rn3\|chr1 (56075279-56075088)
	3-287, gnl\|xenTro1\|scaffold_45 (1163006-1162838)