Ss1.1-Pig4-TMW8016K14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGGAATTGTGGCGATTGGAGGTCCTAATACACTGCAATCATGTCTATTATGTCCTAT AACGGAGGGGCCGTCATGGCCATGAAGGGGAAGAACTGTGTGGCCATCGCTGCCGACAGG CGCTTCGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGC GACCGGCTATACATCGGCCTGGCCGGGCTCGCCACAGACGTCCAGACAGTTGCCCAGCGC CTCAAGTTCCGGCTGAACCTGTATGAGCTGAAGGAAGGGCGGCAGATCAAGCCTTACACC CTCATGAGCATGGTGGCCAACCTCTTGTACGAGAGACGGTTTGGGCCCTACTACACTGAG CCGGTCATCGCCGGGTTGGACCCCAAGACCTTTAAGCCCTTCATTTGCTCTCTAGACCTT ATCGGCTGCCCCATGGTGACTGATGACTTTGTGGTCAGTGGCACCTGCACGGAACAAATG TACGGGATGTGTGAGTCCCTCTGGGAACCCGACATGGATCCAGAGCACCTGTTTGAAACC ATCTCCCAAGCCATGCTGAACGCCGTGGACAGGGACGCGGTGTCGGGCATGGGCGTCATC GTCCACGTCATTGAGAAGGACAAAATCACCACGAGGACACTGAAGGCCCGAATGGACTAG CGGTTCCCAGAGCCCACCTTTTTTTTTTTTTTTTTTTTTTTAATAAAAGATTTTCTTTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGGAATTGTGGCGATTGGAGGTCCTAATACACTGCAATCATGTCTATTATGTCCTAT AACGGAGGGGCCGTCATGGCCATGAAGGGGAAGAACTGTGTGGCCATCGCTGCCGACAGG CGCTTCGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGC GACCGGCTATACATCGGCCTGGCCGGGCTCGCCACAGACGTCCAGACAGTTGCCCAGCGC CTCAAGTTCCGGCTGAACCTGTATGAGCTGAAGGAAGGGCGGCAGATCAAGCCTTACACC CTCATGAGCATGGTGGCCAACCTCTTGTACGAGAGACGGTTTGGGCCCTACTACACTGAG CCGGTCATCGCCGGGTTGGACCCCAAGACCTTTAAGCCCTTCATTTGCTCTCTAGACCTT ATCGGCTGCCCCATGGTGACTGATGACTTTGTGGTCAGTGGCACCTGCACGGAACAAATG TACGGGATGTGTGAGTCCCTCTGGGAACCCGACATGGATCCAGAGCACCTGTTTGAAACC ATCTCCCAAGCCATGCTGAACGCCGTGGACAGGGACGCGGTGTCGGGCATGGGCGTCATC GTCCACGTCATTGAGAAGGACAAAATCACCACGAGGACACTGAAGGCCCGAATGGACTAG CGGTTCCCAGAGCCCACCTTTTTTTTTTTTTTTTTTTTTTTAATAAAAGATTTTCTTTCA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 102 entry(ies) | More info |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
| 45-230, gnl|bosTau2|chr19 (35802552-35802737) | |
| 45-230, gnl|canFam2|chr12 (48752506-48752688) | |
| 45-230, gnl|canFam2|chr12 (48752506-48752695) | |
| 45-230, gnl|canFam2|chr9 (26810725-26810503) | |
| 45-230, gnl|danRer3|chr15 (29865474-29865679) | |
| 45-230, gnl|danRer3|chr15 (29865674-29865489) | |
| 45-230, gnl|danRer3|chr15 (29865674-29865489) | |
| 45-230, gnl|dasNov1|scaffold_38403 (39944-39722) | |
| 45-230, gnl|dasNov1|scaffold_57109 (4273-4412) | |
| 45-230, gnl|dasNov1|scaffold_57109 (4273-4419) | |
| 45-230, gnl|echTel1|scaffold_287949 (54497-54312) | |
| 45-230, gnl|echTel1|scaffold_287949 (54497-54305) | |
| 45-230, gnl|echTel1|scaffold_321514 (3008-3231) | |
| 45-230, gnl|fr1|chrUn (128652078-128651853) | |
| 45-230, gnl|fr1|chrUn (128651861-128652046) | |
| 45-230, gnl|fr1|chrUn (128651861-128652059) | |
| 45-230, gnl|galGal2|chr27 (2537989-2538207) | |
| 45-230, gnl|galGal2|chr27 (2538199-2538014) | |
| 45-230, gnl|galGal2|chr27 (2538199-2538014) | |
| 45-230, gnl|hg17|chr12 (54335036-54335218) | |
| 45-230, gnl|hg17|chr17 (34162902-34163122) | |
| 45-230, gnl|Hg17|chr17 (34162928-34163113) | |
| 45-230, gnl|hg17|chr2 (217301002-217301196) | |
| 45-230, gnl|loxAfr1|scaffold_1668 (98545-98323) | |
| 45-230, gnl|loxAfr1|scaffold_73612 (4800-4613) | |
| 45-230, gnl|loxAfr1|scaffold_73612 (4800-4606) | |
| 45-230, gnl|mm7|chr11 (97812799-97813020) | |
| 45-230, gnl|Mm7|chr11 (97812826-97813011) | |
| 45-230, gnl|mm7|chr16 (21546133-21545948) | |
| 45-230, gnl|mm7|chr16 (21546133-21545941) | |
| 45-230, gnl|monDom2|scaffold_18 (47677561-47677788) | |
| 45-230, gnl|monDom2|scaffold_18 (47677780-47677595) | |
| 45-230, gnl|monDom2|scaffold_18 (47677780-47677595) | |
| 45-230, gnl|oryCun1|scaffold_204187 (12028-11809) | |
| 45-230, gnl|oryCun1|scaffold_204187 (11817-12002) | |
| 45-230, gnl|oryCun1|scaffold_204187 (11817-12001) | |
| 45-230, gnl|panTro1|chr10 (55548428-55548608) | |
| 45-230, gnl|panTro1|chr13 (107420872-107421066) | |
| 45-230, gnl|panTro1|chr19 (37379357-37379577) | |
| 45-230, gnl|rheMac2|chr11 (52707513-52707698) | |
| 45-230, gnl|rheMac2|chr16 (48780117-48780337) | |
| 45-230, gnl|rheMac2|chr7 (23962466-23962658) | |
| 45-230, gnl|rn3|chr10 (86467234-86467455) | |
| 45-230, gnl|rn3|chrX (73955232-73955047) | |
| 45-230, gnl|rn3|chrX (73955232-73955040) | |
| 45-230, gnl|tetNig1|chr18 (1017220-1017012) | |
| 45-230, gnl|tetNig1|chr18 (1017018-1017203) | |
| 45-230, gnl|tetNig1|chr18 (1017018-1017203) | |
| 45-230, gnl|xenTro1|scaffold_334 (661592-661382) | |
| 45-230, gnl|xenTro1|scaffold_334 (661388-661573) | |
| 45-230, gnl|xenTro1|scaffold_334 (661392-661581) | |
| 338-517, gnl|bosTau2|chr19 (35808721-35808900) | |
| 338-517, gnl|canFam2|chr12 (48752219-48752396) | |
| 338-517, gnl|canFam2|chr12 (48752219-48752396) | |
| 338-517, gnl|canFam2|chr9 (26803821-26803611) | |
| 338-517, gnl|danRer3|chr15 (29872122-29872307) | |
| 338-517, gnl|danRer3|chr15 (29872303-29872126) | |
| 338-517, gnl|danRer3|chr15 (29872303-29872126) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4179-4013) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4011-4177) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4011-4177) | |
| 338-517, gnl|echTel1|scaffold_287949 (54734-54882) | |
| 338-517, gnl|echTel1|scaffold_287949 (54884-54609) | |
| 338-517, gnl|echTel1|scaffold_287949 (54884-54609) | |
| 338-517, gnl|fr1|chrUn (128651483-128651297) | |
| 338-517, gnl|fr1|chrUn (128651303-128651480) | |
| 338-517, gnl|fr1|chrUn (128651303-128651480) | |
| 338-517, gnl|galGal2|chr27 (2539198-2539399) | |
| 338-517, gnl|galGal2|chr27 (2539391-2539214) | |
| 338-517, gnl|galGal2|chr27 (2539391-2539214) | |
| 338-517, gnl|hg17|chr12 (54334750-54334927) | |
| 338-517, gnl|hg17|chr17 (34170187-34170397) | |
| 338-517, gnl|Hg17|chr17 (34170209-34170388) | |
| 338-517, gnl|hg17|chr2 (217300715-217300892) | |
| 338-517, gnl|loxAfr1|scaffold_35381 (43670-43460) | |
| 338-517, gnl|loxAfr1|scaffold_73612 (5069-4899) | |
| 338-517, gnl|loxAfr1|scaffold_73612 (5069-4899) | |
| 338-517, gnl|mm7|chr11 (97820124-97820328) | |
| 338-517, gnl|Mm7|chr11 (97820140-97820319) | |
| 338-517, gnl|mm7|chr16 (21546413-21546243) | |
| 338-517, gnl|mm7|chr16 (21546413-21546243) | |
| 338-517, gnl|monDom2|scaffold_18 (47681613-47681823) | |
| 338-517, gnl|monDom2|scaffold_18 (47681815-47681638) | |
| 338-517, gnl|monDom2|scaffold_18 (47681815-47681638) | |
| 338-517, gnl|oryCun1|scaffold_204187 (5052-4844) | |
| 338-517, gnl|oryCun1|scaffold_204187 (4852-5029) | |
| 338-517, gnl|oryCun1|scaffold_204187 (4852-5029) | |
| 338-517, gnl|panTro1|chr10 (55548144-55548321) | |
| 338-517, gnl|panTro1|chr13 (107420585-107420762) | |
| 338-517, gnl|panTro1|chr19 (37386977-37387187) | |
| 338-517, gnl|rheMac2|chr11 (52707225-52707402) | |
| 338-517, gnl|rheMac2|chr16 (48788123-48788333) | |
| 338-517, gnl|rheMac2|chr7 (23962179-23962356) | |
| 338-517, gnl|rn3|chr10 (86471339-86471544) | |
| 338-517, gnl|rn3|chrX (73955519-73955342) | |
| 338-517, gnl|rn3|chrX (73955519-73955342) | |
| 338-517, gnl|tetNig1|chr18 (1016708-1016513) | |
| 338-517, gnl|tetNig1|chr18 (1016521-1016698) | |
| 338-517, gnl|tetNig1|chr18 (1016521-1016698) | |
| 338-517, gnl|xenTro1|scaffold_334 (658027-657821) | |
| 338-517, gnl|xenTro1|scaffold_334 (657826-658003) | |
| 338-517, gnl|xenTro1|scaffold_334 (657826-658003) |
| Aligned organism(s): 102 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-230, gnl|bosTau2|chr19 (35802552-35802737) | |
| 45-230, gnl|canFam2|chr12 (48752506-48752688) | |
| 45-230, gnl|canFam2|chr12 (48752506-48752695) | |
| 45-230, gnl|canFam2|chr9 (26810725-26810503) | |
| 45-230, gnl|danRer3|chr15 (29865474-29865679) | |
| 45-230, gnl|danRer3|chr15 (29865674-29865489) | |
| 45-230, gnl|danRer3|chr15 (29865674-29865489) | |
| 45-230, gnl|dasNov1|scaffold_38403 (39944-39722) | |
| 45-230, gnl|dasNov1|scaffold_57109 (4273-4412) | |
| 45-230, gnl|dasNov1|scaffold_57109 (4273-4419) | |
| 45-230, gnl|echTel1|scaffold_287949 (54497-54312) | |
| 45-230, gnl|echTel1|scaffold_287949 (54497-54305) | |
| 45-230, gnl|echTel1|scaffold_321514 (3008-3231) | |
| 45-230, gnl|fr1|chrUn (128652078-128651853) | |
| 45-230, gnl|fr1|chrUn (128651861-128652046) | |
| 45-230, gnl|fr1|chrUn (128651861-128652059) | |
| 45-230, gnl|galGal2|chr27 (2537989-2538207) | |
| 45-230, gnl|galGal2|chr27 (2538199-2538014) | |
| 45-230, gnl|galGal2|chr27 (2538199-2538014) | |
| 45-230, gnl|hg17|chr12 (54335036-54335218) | |
| 45-230, gnl|hg17|chr17 (34162902-34163122) | |
| 45-230, gnl|Hg17|chr17 (34162928-34163113) | |
| 45-230, gnl|hg17|chr2 (217301002-217301196) | |
| 45-230, gnl|loxAfr1|scaffold_1668 (98545-98323) | |
| 45-230, gnl|loxAfr1|scaffold_73612 (4800-4613) | |
| 45-230, gnl|loxAfr1|scaffold_73612 (4800-4606) | |
| 45-230, gnl|mm7|chr11 (97812799-97813020) | |
| 45-230, gnl|Mm7|chr11 (97812826-97813011) | |
| 45-230, gnl|mm7|chr16 (21546133-21545948) | |
| 45-230, gnl|mm7|chr16 (21546133-21545941) | |
| 45-230, gnl|monDom2|scaffold_18 (47677561-47677788) | |
| 45-230, gnl|monDom2|scaffold_18 (47677780-47677595) | |
| 45-230, gnl|monDom2|scaffold_18 (47677780-47677595) | |
| 45-230, gnl|oryCun1|scaffold_204187 (12028-11809) | |
| 45-230, gnl|oryCun1|scaffold_204187 (11817-12002) | |
| 45-230, gnl|oryCun1|scaffold_204187 (11817-12001) | |
| 45-230, gnl|panTro1|chr10 (55548428-55548608) | |
| 45-230, gnl|panTro1|chr13 (107420872-107421066) | |
| 45-230, gnl|panTro1|chr19 (37379357-37379577) | |
| 45-230, gnl|rheMac2|chr11 (52707513-52707698) | |
| 45-230, gnl|rheMac2|chr16 (48780117-48780337) | |
| 45-230, gnl|rheMac2|chr7 (23962466-23962658) | |
| 45-230, gnl|rn3|chr10 (86467234-86467455) | |
| 45-230, gnl|rn3|chrX (73955232-73955047) | |
| 45-230, gnl|rn3|chrX (73955232-73955040) | |
| 45-230, gnl|tetNig1|chr18 (1017220-1017012) | |
| 45-230, gnl|tetNig1|chr18 (1017018-1017203) | |
| 45-230, gnl|tetNig1|chr18 (1017018-1017203) | |
| 45-230, gnl|xenTro1|scaffold_334 (661592-661382) | |
| 45-230, gnl|xenTro1|scaffold_334 (661388-661573) | |
| 45-230, gnl|xenTro1|scaffold_334 (661392-661581) | |
| 338-517, gnl|bosTau2|chr19 (35808721-35808900) | |
| 338-517, gnl|canFam2|chr12 (48752219-48752396) | |
| 338-517, gnl|canFam2|chr12 (48752219-48752396) | |
| 338-517, gnl|canFam2|chr9 (26803821-26803611) | |
| 338-517, gnl|danRer3|chr15 (29872122-29872307) | |
| 338-517, gnl|danRer3|chr15 (29872303-29872126) | |
| 338-517, gnl|danRer3|chr15 (29872303-29872126) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4179-4013) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4011-4177) | |
| 338-517, gnl|dasNov1|scaffold_57109 (4011-4177) | |
| 338-517, gnl|echTel1|scaffold_287949 (54734-54882) | |
| 338-517, gnl|echTel1|scaffold_287949 (54884-54609) | |
| 338-517, gnl|echTel1|scaffold_287949 (54884-54609) | |
| 338-517, gnl|fr1|chrUn (128651483-128651297) | |
| 338-517, gnl|fr1|chrUn (128651303-128651480) | |
| 338-517, gnl|fr1|chrUn (128651303-128651480) | |
| 338-517, gnl|galGal2|chr27 (2539198-2539399) | |
| 338-517, gnl|galGal2|chr27 (2539391-2539214) | |
| 338-517, gnl|galGal2|chr27 (2539391-2539214) | |
| 338-517, gnl|hg17|chr12 (54334750-54334927) | |
| 338-517, gnl|hg17|chr17 (34170187-34170397) | |
| 338-517, gnl|Hg17|chr17 (34170209-34170388) | |
| 338-517, gnl|hg17|chr2 (217300715-217300892) | |
| 338-517, gnl|loxAfr1|scaffold_35381 (43670-43460) | |
| 338-517, gnl|loxAfr1|scaffold_73612 (5069-4899) | |
| 338-517, gnl|loxAfr1|scaffold_73612 (5069-4899) | |
| 338-517, gnl|mm7|chr11 (97820124-97820328) | |
| 338-517, gnl|Mm7|chr11 (97820140-97820319) | |
| 338-517, gnl|mm7|chr16 (21546413-21546243) | |
| 338-517, gnl|mm7|chr16 (21546413-21546243) | |
| 338-517, gnl|monDom2|scaffold_18 (47681613-47681823) | |
| 338-517, gnl|monDom2|scaffold_18 (47681815-47681638) | |
| 338-517, gnl|monDom2|scaffold_18 (47681815-47681638) | |
| 338-517, gnl|oryCun1|scaffold_204187 (5052-4844) | |
| 338-517, gnl|oryCun1|scaffold_204187 (4852-5029) | |
| 338-517, gnl|oryCun1|scaffold_204187 (4852-5029) | |
| 338-517, gnl|panTro1|chr10 (55548144-55548321) | |
| 338-517, gnl|panTro1|chr13 (107420585-107420762) | |
| 338-517, gnl|panTro1|chr19 (37386977-37387187) | |
| 338-517, gnl|rheMac2|chr11 (52707225-52707402) | |
| 338-517, gnl|rheMac2|chr16 (48788123-48788333) | |
| 338-517, gnl|rheMac2|chr7 (23962179-23962356) | |
| 338-517, gnl|rn3|chr10 (86471339-86471544) | |
| 338-517, gnl|rn3|chrX (73955519-73955342) | |
| 338-517, gnl|rn3|chrX (73955519-73955342) | |
| 338-517, gnl|tetNig1|chr18 (1016708-1016513) | |
| 338-517, gnl|tetNig1|chr18 (1016521-1016698) | |
| 338-517, gnl|tetNig1|chr18 (1016521-1016698) | |
| 338-517, gnl|xenTro1|scaffold_334 (658027-657821) | |
| 338-517, gnl|xenTro1|scaffold_334 (657826-658003) | |
| 338-517, gnl|xenTro1|scaffold_334 (657826-658003) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cov (0.528611) | |
| ece (0.45861) | |
| hlv (0.417769) | |
| nlu (0.383362) | |
| ton (0.351) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| ece (0.45861) | |
| hlv (0.417769) | |
| nlu (0.383362) | |
| ton (0.351) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pgl (0.118483) | |
| eje (0.0988338) |