Non-Coding RNA Search

Ss1.1-Pig4-TMW8016K16.5

Sequence:


               
               AAAAAAACAGGCTGCTCATTTGTTAAGTCATATGCTACAACAGGGTCATTTTAAGATTTA
AAGCTTGAATGTAAAATAAATCTATTTCTCATTGGCTTTATGCAGAGTTATAGGGAATAG
TATTCAGTGTGGGTAGGTATAGAAACAAGAAACATTTTCAGAGGATGGGGTGGGGAAGGA
AAACACAGGTATCTTATAGGAAGTCCCGATTCCAAAGGGGAAAGTGATCTGTGCATGTTT
CTTTCTTTCTTTCTTTTTTTTTTTTTTTAATATTTTTGCATATATTTACCATTTTATTGT
GTGTATATATAGATGACCATATAGGAAATTGATATTTGTAATAGTGGATTTGTTAATACT
TTTTACATAACATTACTGTTTAAATTGTAAACAGATTTTTCTCAGGATTAGTTTGAAAAA
TAATCTGAATTGTCATCTTAACATCCATCTATAGGGAAGTGATTAGTTCTATTACTCAAT
TTGTTTCCTCAGCATTGAAATGACTTAATAGAACCCTTGTGACCTGCTGCAAAAATTTTC
CTCTCTAAAGAAAAGGTTATGGTGGCAAATGACGTTTATTTTATTTTGTAAAAAAAGAAA
AAAAAATATGTACTATGTACTTTTGTGTAAACACTGAAAAATCTCTAGTCATCTCTAAGA
ATTAACTTGCAACTGTTTTCTATAGTGCTGTCGTCTTGGGCAATGGGCAATTACATGACT
TTGTGTTTGTTTCCTTTGCAGTCTTTTTTTTTTTTTCCCCCCCAAACTCTTCCTCGTAGG
AAAAAAAAAAGGCCGCCCGCGTCTGGTCCCATTCCCGTTGCAGTGAAACCTCGAGTTCCA
CAGCCTTTGCATGCTGGCTTCTCTAACCCTGTGTGCTGCGTGTGCTTGTTTTTCTCATCT
CGTATTCTTTTTTAAAGTCATGCTTAACTACTGTGGGAGAGAATAACTGTAAACAGCTTT
AATTAAATCATACTTATAAAAAACTATTTTCTTATACTCCACTTTATGCTTTTGGTATTG
TTGATCTTTAAAAATTAAATGGTCTTTGATAATGGATCTATTTTGTATTGCCTTATTAAG
ACCAAATACTTCTTGTCATCCCATTCTTTATCCTCTCATTTCATGGAATTGTTATCGTTA
ATTAAAACTTTTTTAAACACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAACAGGCTGCTCATTTGTTAAGTCATATGCTACAACAGGGTCATTTTAAGATTTA
AAGCTTGAATGTAAAATAAATCTATTTCTCATTGGCTTTATGCAGAGTTATAGGGAATAG
TATTCAGTGTGGGTAGGTATAGAAACAAGAAACATTTTCAGAGGATGGGGTGGGGAAGGA
AAACACAGGTATCTTATAGGAAGTCCCGATTCCAAAGGGGAAAGTGATCTGTGCATGTTT
CTTTCTTTCTTTCTTTTTTTTTTTTTTTAATATTTTTGCATATATTTACCATTTTATTGT
GTGTATATATAGATGACCATATAGGAAATTGATATTTGTAATAGTGGATTTGTTAATACT
TTTTACATAACATTACTGTTTAAATTGTAAACAGATTTTTCTCAGGATTAGTTTGAAAAA
TAATCTGAATTGTCATCTTAACATCCATCTATAGGGAAGTGATTAGTTCTATTACTCAAT
TTGTTTCCTCAGCATTGAAATGACTTAATAGAACCCTTGTGACCTGCTGCAAAAATTTTC
CTCTCTAAAGAAAAGGTTATGGTGGCAAATGACGTTTATTTTATTTTGTAAAAAAAGAAA
AAAAAATATGTACTATGTACTTTTGTGTAAACACTGAAAAATCTCTAGTCATCTCTAAGA
ATTAACTTGCAACTGTTTTCTATAGTGCTGTCGTCTTGGGCAATGGGCAATTACATGACT
TTGTGTTTGTTTCCTTTGCAGTCTTTTTTTTTTTTTCCCCCCCAAACTCTTCCTCGTAGG
AAAAAAAAAAGGCCGCCCGCGTCTGGTCCCATTCCCGTTGCAGTGAAACCTCGAGTTCCA
CAGCCTTTGCATGCTGGCTTCTCTAACCCTGTGTGCTGCGTGTGCTTGTTTTTCTCATCT
CGTATTCTTTTTTAAAGTCATGCTTAACTACTGTGGGAGAGAATAACTGTAAACAGCTTT
AATTAAATCATACTTATAAAAAACTATTTTCTTATACTCCACTTTATGCTTTTGGTATTG
TTGATCTTTAAAAATTAAATGGTCTTTGATAATGGATCTATTTTGTATTGCCTTATTAAG
ACCAAATACTTCTTGTCATCCCATTCTTTATCCTCTCATTTCATGGAATTGTTATCGTTA
ATTAAAACTTTTTTAAACACAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               707-850, - strand, RNAz p=0.923723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               707-850, - strand, RNAz p=0.923723

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1159, gnl|bosTau2|chr18 (17791611-17792746)
               

               
               2-1159, gnl|Hg17|chr16 (48820956-48822094)
               

               
               2-1159, gnl|Mm7|chr8 (86849769-86850892)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1159, gnl|bosTau2|chr18 (17791611-17792746)
               

               
               2-1159, gnl|Hg17|chr16 (48820956-48822094)
               

               
               2-1159, gnl|Mm7|chr8 (86849769-86850892)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               kid (0.259471)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	2-1159, gnl\|bosTau2\|chr18 (17791611-17792746)
	2-1159, gnl\|Hg17\|chr16 (48820956-48822094)
	2-1159, gnl\|Mm7\|chr8 (86849769-86850892)

	kid (0.259471)
	jej (0.197844)
	sin (0.174948)
	bla (0.124347)
	clu (0.119646)