Non-Coding RNA Search

Ss1.1-Pig4-TMW8016K22.5

Sequence:


               
               CTGGCTGCGAGTAGGTTCGGAGAAGCGGTTGCTACCAGTGGCTTTTTTGCGGATGTGTTG
CTGTCACTGAACCGTGGCCCATTGGAAAGCACTAGGGAAGCTCAGCCGTCAGGATGTCCA
AGTACAAACTGATTATGTTGAGACATGGAGAGGGTGCTTGGAATAAAGAGAACCGTTTTT
GTAGCTGGGTGGACCAGAAACTTAACAGTGAAGGAATGGAGGAAGCTCGGAACTGTGGGA
AGCAACTCAAAGCGCTCAACTTTGAGTTTGATCTCGTGTTCACGTCCGTCCTTAATCGGT
CCATCCATACAGCCTGGCTGATCCTGGAAGAGCTGGGGCAGGAGTGGGTTCCCGTGGAAA
GCTCCTGGCGTCTCAATGAGCGTCACTATGGAGCCTTGATCGGTCTCAACAGGGAGCAAA
TGGCTTTGAATCACGGTGAGGAGCAGGTGAGGCTGTGGAGAAGGAGCTACAATATAACCC
CACCGCCCATTGAGGAGTCCCATCCTTACTTCCACGAAATCTACAACGACCGGAGGTACA
AAGTGTGCGACGTGCCTTTGGATCAGCTGCCGCGATCCGAGAGCTTGAAGGATGTTCTGG
AGAGACTCCTTCCCTATTGGAATGAAAGGATTGCTCCTGAAGTATTAAGTGGTAAAACCA
TCCTGATATCTGCCCATGGAAATAGCAGCCGGGCACTCCTGAAACATCTGGAAGGTATCT
CCGATGAGGACATTATCAACATCACCCTTCCTACTGGGGTCCCCATTCTTCTGGAGCTGG
ACGAGAACCTGCACGCTGTTGGGCCTCACCAGTTCCTGGGTGACCAAGAGGCTATCCAAG
CAGCCATTAAGAAAGTAGAGGATCAAGGAAAAGTGAAACGAGCTGACAAATAAATTCTTT
CACGTGCCGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTGCGAGTAGGTTCGGAGAAGCGGTTGCTACCAGTGGCTTTTTTGCGGATGTGTTG
CTGTCACTGAACCGTGGCCCATTGGAAAGCACTAGGGAAGCTCAGCCGTCAGGATGTCCA
AGTACAAACTGATTATGTTGAGACATGGAGAGGGTGCTTGGAATAAAGAGAACCGTTTTT
GTAGCTGGGTGGACCAGAAACTTAACAGTGAAGGAATGGAGGAAGCTCGGAACTGTGGGA
AGCAACTCAAAGCGCTCAACTTTGAGTTTGATCTCGTGTTCACGTCCGTCCTTAATCGGT
CCATCCATACAGCCTGGCTGATCCTGGAAGAGCTGGGGCAGGAGTGGGTTCCCGTGGAAA
GCTCCTGGCGTCTCAATGAGCGTCACTATGGAGCCTTGATCGGTCTCAACAGGGAGCAAA
TGGCTTTGAATCACGGTGAGGAGCAGGTGAGGCTGTGGAGAAGGAGCTACAATATAACCC
CACCGCCCATTGAGGAGTCCCATCCTTACTTCCACGAAATCTACAACGACCGGAGGTACA
AAGTGTGCGACGTGCCTTTGGATCAGCTGCCGCGATCCGAGAGCTTGAAGGATGTTCTGG
AGAGACTCCTTCCCTATTGGAATGAAAGGATTGCTCCTGAAGTATTAAGTGGTAAAACCA
TCCTGATATCTGCCCATGGAAATAGCAGCCGGGCACTCCTGAAACATCTGGAAGGTATCT
CCGATGAGGACATTATCAACATCACCCTTCCTACTGGGGTCCCCATTCTTCTGGAGCTGG
ACGAGAACCTGCACGCTGTTGGGCCTCACCAGTTCCTGGGTGACCAAGAGGCTATCCAAG
CAGCCATTAAGAAAGTAGAGGATCAAGGAAAAGTGAAACGAGCTGACAAATAAATTCTTT
CACGTGCCGGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094821|gb|EAL24067.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094821|gb|EAL24067.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               89-195, - strand, RNAz p=0.747684
               

               
               716-864, + strand, RNAz p=0.804922

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-195, - strand, RNAz p=0.747684
               

               
               716-864, + strand, RNAz p=0.804922

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               89-911, gnl|bosTau2|chr4 (53713728-53712904)
               

               
               89-911, gnl|Hg17|chr7 (133803478-133821056)
               


               
               123-847, gnl|bosTau2|chr12 (31708515-31707797)
               

               
               123-847, gnl|Hg17|chr12 (102927033-102927751)
               

               
               123-847, gnl|Mm7|chr3 (11022340-11021622)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-911, gnl|bosTau2|chr4 (53713728-53712904)
               

               
               89-911, gnl|Hg17|chr7 (133803478-133821056)
               


               
               123-847, gnl|bosTau2|chr12 (31708515-31707797)
               

               
               123-847, gnl|Hg17|chr12 (102927033-102927751)
               

               
               123-847, gnl|Mm7|chr3 (11022340-11021622)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	89-195, - strand, RNAz p=0.747684
	716-864, + strand, RNAz p=0.804922

	89-911, gnl\|bosTau2\|chr4 (53713728-53712904)
	89-911, gnl\|Hg17\|chr7 (133803478-133821056)

	123-847, gnl\|bosTau2\|chr12 (31708515-31707797)
	123-847, gnl\|Hg17\|chr12 (102927033-102927751)
	123-847, gnl\|Mm7\|chr3 (11022340-11021622)