Non-Coding RNA Search

Ss1.1-Pig4-TMW8016L10.5

Sequence:


               
               GCGGAGGCCCGGGCGACTCTTTTGAATGGAATCGGGCTGATTCATCGCCGGTTCGCGGAG
CCAGAACCCGGCTGAGCCCGAGCTGCTGCTGCCGCCGCCGTCACGGCCGCCGCCGCCGCT
GTCACCGCCACCGCCGCGTCACAAGGGTCCAGACTGCGGCCTCTTCGCCAGCCCGCCAAA
GGAGAGAGAGGAAAAAAAAAGACTTGGGAAAAATTATACCTGCCAGTATTAGCAATCTCT
TAAGAAGAAATTGGTCAAATTCAACAAATTGAAGTTAACACTACAAGAGTTATAGTTACT
GACCAGAAAAAATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAGG
GGCCACCTACAGATGCTCCTGCTGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGG
CACTATTGAAAATGTTAAAACATGGTCGCGCTGGAGTTCCAATGGAAGTTATGGGTCTGA
TGCTTGGAGAATTTGTTGATGATTACACCGTCAGAGTGATTGATGTGTTTGCTATGCCAC
AGTCGGGAACAGGTGTCAGTGTAGAAGCAGTTGATCCAGTGTTCCAAGCCAAAATGTTAG
ATATGTTGAAGCAGACAGGAAGGCCTGAGATGGTTGTTGGTTGGTATCACAGTCACCCTG
GCTTTGGTTGTTGGCTTTCTGGTGTGGATATCAACACTCAGCAGAGCTTTGAAGCCTTGT
CAGAGAGAGCTGTGGCAGTGGTTGTGGATCCCATTCAGAGTGTAAAAGGAAAGGTTGTTA
TTGATGCCTTCAGATTGATCAATGCTAATATGATGGTCTTAGGACATGAACCAAGACAAA
CAACCTCAAATCTGGGTCACCTAAACAAGCCATCTATCCAGGCATTAATTCACGGACTAA
ACAGACATTATTACTCCATTACAATTAACTATCGGAAAAACGAACTGGAACAGAAGATGT
TGCTAAATTTGCATAAAAAAAGTTGGATGGAAGGTTTGACACTTCAGGACTACAGTGAAC
ACTGTAAACACAATGAATCAGTGGTGAAAGAAATGCTGGAATTAGCCAAGAATTACAATA
AGGCTGTAGAAGAAGAAGATAAAATGACACCTGAACAGCTGGCAATAAAGAATGTTGGCA
AGCAGGACCCCAAACGTCACTTGGAGGAACATGTGGATGTACTTATGACTTCAAATATTG
TCCAGTGTTTAGCAGCTATGTTGGATACTGTTGTATTTAAATAAAGCAATGCAAAAAGCT
ATTAGTGATACTTTCAGTGTATATTCCTCTATTGTTCCTACTGCTCAAAATCAAGGGACT
TCTGAAGGTGTATATAGTTAAATATAAGACATCTGGCATCATTTGCAGCACTGTAACACC
TTCAGTCTCCATTGTGCAATTACTTCTGTTTCTTTAGTCAGGGTCTTTGCAGATTCCAAA
GTTGTATAAGAATACATCAAAGTGGACAAATTTTGTTAAGATCCCATTTAATATTTGAAG
AAATCAGTAACACAAATATATTTTGATTGTTGGCTTACACAATAAAATACATTTCCAATC
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGGCCCGGGCGACTCTTTTGAATGGAATCGGGCTGATTCATCGCCGGTTCGCGGAG
CCAGAACCCGGCTGAGCCCGAGCTGCTGCTGCCGCCGCCGTCACGGCCGCCGCCGCCGCT
GTCACCGCCACCGCCGCGTCACAAGGGTCCAGACTGCGGCCTCTTCGCCAGCCCGCCAAA
GGAGAGAGAGGAAAAAAAAAGACTTGGGAAAAATTATACCTGCCAGTATTAGCAATCTCT
TAAGAAGAAATTGGTCAAATTCAACAAATTGAAGTTAACACTACAAGAGTTATAGTTACT
GACCAGAAAAAATGGACAGACTTCTTAGACTTGGAGGAGGTATGCCTGGACTGGGCCAGG
GGCCACCTACAGATGCTCCTGCTGTGGACACAGCAGAACAAGTCTATATCTCTTCCCTGG
CACTATTGAAAATGTTAAAACATGGTCGCGCTGGAGTTCCAATGGAAGTTATGGGTCTGA
TGCTTGGAGAATTTGTTGATGATTACACCGTCAGAGTGATTGATGTGTTTGCTATGCCAC
AGTCGGGAACAGGTGTCAGTGTAGAAGCAGTTGATCCAGTGTTCCAAGCCAAAATGTTAG
ATATGTTGAAGCAGACAGGAAGGCCTGAGATGGTTGTTGGTTGGTATCACAGTCACCCTG
GCTTTGGTTGTTGGCTTTCTGGTGTGGATATCAACACTCAGCAGAGCTTTGAAGCCTTGT
CAGAGAGAGCTGTGGCAGTGGTTGTGGATCCCATTCAGAGTGTAAAAGGAAAGGTTGTTA
TTGATGCCTTCAGATTGATCAATGCTAATATGATGGTCTTAGGACATGAACCAAGACAAA
CAACCTCAAATCTGGGTCACCTAAACAAGCCATCTATCCAGGCATTAATTCACGGACTAA
ACAGACATTATTACTCCATTACAATTAACTATCGGAAAAACGAACTGGAACAGAAGATGT
TGCTAAATTTGCATAAAAAAAGTTGGATGGAAGGTTTGACACTTCAGGACTACAGTGAAC
ACTGTAAACACAATGAATCAGTGGTGAAAGAAATGCTGGAATTAGCCAAGAATTACAATA
AGGCTGTAGAAGAAGAAGATAAAATGACACCTGAACAGCTGGCAATAAAGAATGTTGGCA
AGCAGGACCCCAAACGTCACTTGGAGGAACATGTGGATGTACTTATGACTTCAAATATTG
TCCAGTGTTTAGCAGCTATGTTGGATACTGTTGTATTTAAATAAAGCAATGCAAAAAGCT
ATTAGTGATACTTTCAGTGTATATTCCTCTATTGTTCCTACTGCTCAAAATCAAGGGACT
TCTGAAGGTGTATATAGTTAAATATAAGACATCTGGCATCATTTGCAGCACTGTAACACC
TTCAGTCTCCATTGTGCAATTACTTCTGTTTCTTTAGTCAGGGTCTTTGCAGATTCCAAA
GTTGTATAAGAATACATCAAAGTGGACAAATTTTGTTAAGATCCCATTTAATATTTGAAG
AAATCAGTAACACAAATATATTTTGATTGTTGGCTTACACAATAAAATACATTTCCAATC
TAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               PSDE_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               PSDE_MOUSE

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-110, gnl|bosTau2|chr2 (19879056-19878947)
               

               
               1-110, gnl|Hg17|chr2 (161990455-161990562)
               

               
               1-110, gnl|Mm7|chr2 (61642306-61642406)
               


               
               182-306, gnl|bosTau2|chr2 (19870947-19870815)
               

               
               182-306, gnl|Hg17|chr2 (161998459-161998587)
               

               
               182-306, gnl|Mm7|chr2 (61650997-61651120)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr2 (19879056-19878947)
               

               
               1-110, gnl|Hg17|chr2 (161990455-161990562)
               

               
               1-110, gnl|Mm7|chr2 (61642306-61642406)
               


               
               182-306, gnl|bosTau2|chr2 (19870947-19870815)
               

               
               182-306, gnl|Hg17|chr2 (161998459-161998587)
               

               
               182-306, gnl|Mm7|chr2 (61650997-61651120)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               rec (0.865351)
               

               
               lin (0.728014)
               

               
               sme (0.610874)
               

               
               fty (0.527519)
               

               
               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.865351)
               

               
               lin (0.728014)
               

               
               sme (0.610874)
               

               
               fty (0.527519)
               

               
               ret (0.514933)
               

               
               mgp (0.461361)
               

               
               bfe (0.449573)
               

               
               lyg (0.399308)
               

               
               thg (0.380373)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-110, gnl\|bosTau2\|chr2 (19879056-19878947)
	1-110, gnl\|Hg17\|chr2 (161990455-161990562)
	1-110, gnl\|Mm7\|chr2 (61642306-61642406)

	182-306, gnl\|bosTau2\|chr2 (19870947-19870815)
	182-306, gnl\|Hg17\|chr2 (161998459-161998587)
	182-306, gnl\|Mm7\|chr2 (61650997-61651120)

	rec (0.865351)
	lin (0.728014)
	sme (0.610874)
	fty (0.527519)
	ret (0.514933)
	mgp (0.461361)
	bfe (0.449573)
	lyg (0.399308)
	thg (0.380373)
	bla (0.373042)
	vin (0.332557)
	tbr (0.308356)
	fat (0.294855)
	ski (0.29347)
	liv (0.292569)
	ste (0.270416)
	cbe (0.239234)
	spc (0.226732)
	tes (0.207814)
	nep (0.183925)
	sin (0.174948)
	nje (0.16592)
	nco (0.161734)
	fco (0.157208)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)
	nbm (0.0993246)