Non-Coding RNA Search

Ss1.1-Pig4-TMW8016L12.5

Sequence:


               
               ATTTATGCAGGACTCAACCTTCTCTCCACCCGTGTTCTCAGTATTTGACCAGCTCTCCTT
CAGCCACTGGATTCATGGGTTCAGTCCATTTGTGAAGCTGTGATAGTGTAACTGGAAAAC
CATTGTGATGAAATTTTTGTTCACATGCTGATCTGTCCCCCAAACAAATCAATTAAAGGG
TAGTTTCCTGGAACTATCGCAAACAGCTTCATCAACTGGAACCATAGAAATAAATACAAC
TGGAATATTCTTAAACAAAAGGAAACTGGGGTTTTTTTAAGTGTAAATTTATTACTAGTC
CACAGAGTTTTAATATTTTGATTGTCTGGGTGGTCTAACAAAGAGCCTAGCCGACTTTCC
TTCTGTAAAGTCCTCCTTGTAGGCTTTTTTAAAGTACTGTACATATTTGCAATTACATTG
TGCATAGATTCTTAATGGGTAGTTTTCTTTTGTCAGGCTACAACAACAAATTGCAAATTC
CTTGTTTGTAATGTAAATGATTGAATACATTTTGTTAATATGTTTTTATTCCTATGTTTT
GCTATTAAAAGAATTTTATAACATTTCCAAGACAAAAATTACAAGTTTATGCTTTGAAGA
ATTTATGTAATTAAAATTTCACCAAACTGATCTTTTTCATTTAGGAGTTATTTGGGTTTT
GACACTGGAGTTGCGCCAAATAAGCATCAGAAATGTAAGATGCTTAAAACTGCTACACTA
CTTGTATCGGTTGGGGGTTTGGGTTTGGGGGTTCTTTGATTTTATTAACAAGAATTTTTT
TTTTTCCAAATTTAAAAGCCTTAAATGTACTGTACGCCTCAGATTGTTGTACAGTTGGAT
TGCGGTTGATTGCCAGTTTGTGTACTGTTGCTTGGGTGCAACACAGCGGTCGGTCATGGA
ATAAAGGATGCATGGATCAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATGCAGGACTCAACCTTCTCTCCACCCGTGTTCTCAGTATTTGACCAGCTCTCCTT
CAGCCACTGGATTCATGGGTTCAGTCCATTTGTGAAGCTGTGATAGTGTAACTGGAAAAC
CATTGTGATGAAATTTTTGTTCACATGCTGATCTGTCCCCCAAACAAATCAATTAAAGGG
TAGTTTCCTGGAACTATCGCAAACAGCTTCATCAACTGGAACCATAGAAATAAATACAAC
TGGAATATTCTTAAACAAAAGGAAACTGGGGTTTTTTTAAGTGTAAATTTATTACTAGTC
CACAGAGTTTTAATATTTTGATTGTCTGGGTGGTCTAACAAAGAGCCTAGCCGACTTTCC
TTCTGTAAAGTCCTCCTTGTAGGCTTTTTTAAAGTACTGTACATATTTGCAATTACATTG
TGCATAGATTCTTAATGGGTAGTTTTCTTTTGTCAGGCTACAACAACAAATTGCAAATTC
CTTGTTTGTAATGTAAATGATTGAATACATTTTGTTAATATGTTTTTATTCCTATGTTTT
GCTATTAAAAGAATTTTATAACATTTCCAAGACAAAAATTACAAGTTTATGCTTTGAAGA
ATTTATGTAATTAAAATTTCACCAAACTGATCTTTTTCATTTAGGAGTTATTTGGGTTTT
GACACTGGAGTTGCGCCAAATAAGCATCAGAAATGTAAGATGCTTAAAACTGCTACACTA
CTTGTATCGGTTGGGGGTTTGGGTTTGGGGGTTCTTTGATTTTATTAACAAGAATTTTTT
TTTTTCCAAATTTAAAAGCCTTAAATGTACTGTACGCCTCAGATTGTTGTACAGTTGGAT
TGCGGTTGATTGCCAGTTTGTGTACTGTTGCTTGGGTGCAACACAGCGGTCGGTCATGGA
ATAAAGGATGCATGGATCAGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               584-702, - strand, RNAz p=0.66454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-702, - strand, RNAz p=0.66454

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               275-936, gnl|bosTau2|chr18 (47094042-47093391)
               

               
               275-936, gnl|Hg17|chr15 (78834378-78835013)
               

               
               275-936, gnl|Mm7|chr7 (80031583-80030940)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               275-936, gnl|bosTau2|chr18 (47094042-47093391)
               

               
               275-936, gnl|Hg17|chr15 (78834378-78835013)
               

               
               275-936, gnl|Mm7|chr7 (80031583-80030940)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	275-936, gnl\|bosTau2\|chr18 (47094042-47093391)
	275-936, gnl\|Hg17\|chr15 (78834378-78835013)
	275-936, gnl\|Mm7\|chr7 (80031583-80030940)

	pro (0.512033)
	lyg (0.266205)
	fcc (0.197785)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)
	ecc (0.115035)