Non-Coding RNA Search

Ss1.1-Pig4-TMW8016L16.5.5

Sequence:


               
               AAGCTGTCAGAGCCTCCTGTCTGGAGCTGGCACTTCCCATTCCACTTTCTCATTTTTCCT
TCTTGATGACCATAGATACGTCCCAAAGGCAAAAGTGCAGGGTTACAGCACATGGTACAA
CTACTCACCTTCAAAACCCACATAAAATTTCTAAGCTCCAGAGCCTTCCGAATCTTCAGT
CCTGTCTGGGAATAGTAGCTGACTCATTCCAGATAGATGATTGGCTGTTACGTTTTGGAG
ATCATTCCAAATCCTTGACAGTTGCTTTGTGGAGATTTGGATCATCCTTTGATGTGATAG
CTATTTCACCAACCTCTTCCTCCCATCCTGCATTTGTAACCCTGAACTTGACCCTCTGGG
TAGAATCCCATTATACTCAAGAGATTGGATCCCAGTAAATTGAGGTCTTCACCTTCAGGA
AAGACATTTCATTTCCCTGGCTCACCAGCAGCATTGATTTATGAGCACCAAACAGTTTTA
ATATTCCGTCCTTCCTGGTGTTACTGCCCCCCCTTTTGATTTTTTTGTGTATCTAAGAAC
CAGGAAAAATAAAATCTTAGGTTTTAAAAGGTTAAAAAAAAATTCTGTTTCAGAAACTGT
CAAATGTACCATATTTGTATTAAGAGTTGTTGGGAATTTTTGTACAATGAATTGACATTT
TTTATGGTGACAATATTTACGCTTGTGATCAAATAAGATGTTAAATTCTGAAATCATATT
TGCTATGCAGCTGAAGATGATATTTTGCTTTGTATTTTGGGGTACCTGTGTTGAGTTGAT
AAACATTTCCATCTCCATTAAAATTGCTTCCAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCTGTCAGAGCCTCCTGTCTGGAGCTGGCACTTCCCATTCCACTTTCTCATTTTTCCT
TCTTGATGACCATAGATACGTCCCAAAGGCAAAAGTGCAGGGTTACAGCACATGGTACAA
CTACTCACCTTCAAAACCCACATAAAATTTCTAAGCTCCAGAGCCTTCCGAATCTTCAGT
CCTGTCTGGGAATAGTAGCTGACTCATTCCAGATAGATGATTGGCTGTTACGTTTTGGAG
ATCATTCCAAATCCTTGACAGTTGCTTTGTGGAGATTTGGATCATCCTTTGATGTGATAG
CTATTTCACCAACCTCTTCCTCCCATCCTGCATTTGTAACCCTGAACTTGACCCTCTGGG
TAGAATCCCATTATACTCAAGAGATTGGATCCCAGTAAATTGAGGTCTTCACCTTCAGGA
AAGACATTTCATTTCCCTGGCTCACCAGCAGCATTGATTTATGAGCACCAAACAGTTTTA
ATATTCCGTCCTTCCTGGTGTTACTGCCCCCCCTTTTGATTTTTTTGTGTATCTAAGAAC
CAGGAAAAATAAAATCTTAGGTTTTAAAAGGTTAAAAAAAAATTCTGTTTCAGAAACTGT
CAAATGTACCATATTTGTATTAAGAGTTGTTGGGAATTTTTGTACAATGAATTGACATTT
TTTATGGTGACAATATTTACGCTTGTGATCAAATAAGATGTTAAATTCTGAAATCATATT
TGCTATGCAGCTGAAGATGATATTTTGCTTTGTATTTTGGGGTACCTGTGTTGAGTTGAT
AAACATTTCCATCTCCATTAAAATTGCTTCCAAACC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr7 (48021826-48021005)
               

               
               1-815, gnl|Hg17|chr5 (156754361-156755169)
               

               
               1-815, gnl|Mm7|chr11 (46151328-46150616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr7 (48021826-48021005)
               

               
               1-815, gnl|Hg17|chr5 (156754361-156755169)
               

               
               1-815, gnl|Mm7|chr11 (46151328-46150616)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cbr (3.96724)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.96724)
               

               
               cbe (0.478469)
               

               
               fcc (0.39557)
               

               
               fco (0.314416)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)

	1-815, gnl\|bosTau2\|chr7 (48021826-48021005)
	1-815, gnl\|Hg17\|chr5 (156754361-156755169)
	1-815, gnl\|Mm7\|chr11 (46151328-46150616)

	cbr (3.96724)
	cbe (0.478469)
	fcc (0.39557)
	fco (0.314416)
	thg (0.253582)
	fbs (0.175346)
	csp (0.161186)
	spl (0.143184)
	nbm (0.0993246)