Ss1.1-Pig4-TMW8016L18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGACCACCCCCCTGTCTGGAACGCCGCTGCCGTCCCCCGTGGTCGAGAGAAGCAGCGT GGTCGGGCGAGAATATGACACCCTTTCCAAATATTCGCCGAAGATCCCCTCGGCTCCTTC CGCCAGAGCGACGACCAGCCCTTTGGTCGATATGTTTAATAACCCAGCCGCGGTGGCCCA GAATTCCGAGAAAATACAGAATTCCACAGATTCTTCAGACGATGCCAGTCTGCAGCGATC GGTTTCTGTTGCCACCGGACTGAACATGGTGAAAAAGCAGAAGGTGAAAACCATCTTCCC GCACACGGCCGGCGCCAACCAGACCTTGCTGAGCTTCGCGCAGGGAGACATCATCACGCT GCTCGTCCCGGAGGAGAAGGACGGCTGGCTCTACGGCGAGCACGACGGCACCAGGGTGAG GGGCTGGTTCCCGTCGTCATACACAAAGCTGCTGGAAGACGATTCGGAGACCACAAGCGT GCCCGCGCCCAGCTCAGCGCCGGTACGGAGCGTGAGCACGATGAACTTATCGGAGAAGAG CAGCGTCGTCATCCCCCCACCCGACTACTTGGAGTGTCTGTCGACGCGAGCGGCTGCAGA TAAGAAAGTGGATGCTTCCTCAAACACGGCTGCCTTTAAGGCACCGGTGTCCAAACCGGG ACCCACACCTCCTAGTGACACAAATGGGATTGCAAAGCCACCTTTTCTCAGTGGAGAAAA CCCCTTTGCTACTGTGAAACTCCGGCCGACAGTGACGAATGACCGGTCAGCACCCATCAT TTGATGAAAAGCCGGCCGTGGGATCTCCGGCACCTGTTCAGTTCTCACCTGCAAAACGAT AAGTGTATACGTTTGATAAGTGCTGTACTGGTGCAAAGCTTCACCAGAGGGTGCCTGAAC TTCAGTGTACTCCCCTCGAGCAAATCAGCGCATTTTCTAATTGAACATAGTCAGGTTTAC ACATTTTTCTTTCAATCAGCTGGGTTTACGTGTTTTTTTTAATCGGTGATAATGATCAAC TCAACCACTTAAAACATCTTCTTCCCATTCTGCTCAAAAACAGTAAATTTGGTTCCAATC CTTATTGTATCATTTTTTGGTAATTTTTTTCTTTTTTTGGCCACCCCGAGTCACCTGCAG TCCCGGGCCAGGGATCAAATCTGTGTCCCCGTGCTGCAGAGACACCGCTGATCCCGTCGC GCCACAGCAGCAACGCCTATGATTATTTTTTTAAAAGTCAGAATAAGGGATAGTTGATGC TTTCATGACTGGCTTTCTGCCCCGGAAAAGCAAATGAGATCGGTTTTATTTTATCAAGCA TGATGTGCTGACAGAGCATTATGATATTCAAGGAAAATACTATGTAAATTTGCGTCCCGG CATGCAAATCATCTTAAGCAATATAAAGTATGAGAATATTGTATAAAATCTAATGTTTGA AAAACGTTTAAATTTTTGCTTAATCAAATGTAGCCCCACCCAAGCAAGATAGAGAATCCC CCCACTCCCCAGGACTGCTGTAGACACAGCTCTAGAGCACCGAGAATTCACCTTTCTCTC ATCACCGCCATGGTATCACACCACCAATTTCAAAGAGGTCCTGAATTTAGGAGTTGTGCG TTACCAGCCGGAATGAGCAATGAAAACCCACCAGGCTGTGCCACCCTAAGGTCTGTGTAG AAACCCTAGGTGCTCTCACCGAGCTGACTGGGGGCTGCACTTCAGCTGGGACCCGCCACT GTGCACGGGGAAGCTGGGTTTTGGGAGGGAATCAGAGCCCTGGGATCAGGGGGCGTCTCT GGCTGCAGGGACGAGACCCAGTTTGGAGGCTGGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGACCACCCCCCTGTCTGGAACGCCGCTGCCGTCCCCCGTGGTCGAGAGAAGCAGCGT GGTCGGGCGAGAATATGACACCCTTTCCAAATATTCGCCGAAGATCCCCTCGGCTCCTTC CGCCAGAGCGACGACCAGCCCTTTGGTCGATATGTTTAATAACCCAGCCGCGGTGGCCCA GAATTCCGAGAAAATACAGAATTCCACAGATTCTTCAGACGATGCCAGTCTGCAGCGATC GGTTTCTGTTGCCACCGGACTGAACATGGTGAAAAAGCAGAAGGTGAAAACCATCTTCCC GCACACGGCCGGCGCCAACCAGACCTTGCTGAGCTTCGCGCAGGGAGACATCATCACGCT GCTCGTCCCGGAGGAGAAGGACGGCTGGCTCTACGGCGAGCACGACGGCACCAGGGTGAG GGGCTGGTTCCCGTCGTCATACACAAAGCTGCTGGAAGACGATTCGGAGACCACAAGCGT GCCCGCGCCCAGCTCAGCGCCGGTACGGAGCGTGAGCACGATGAACTTATCGGAGAAGAG CAGCGTCGTCATCCCCCCACCCGACTACTTGGAGTGTCTGTCGACGCGAGCGGCTGCAGA TAAGAAAGTGGATGCTTCCTCAAACACGGCTGCCTTTAAGGCACCGGTGTCCAAACCGGG ACCCACACCTCCTAGTGACACAAATGGGATTGCAAAGCCACCTTTTCTCAGTGGAGAAAA CCCCTTTGCTACTGTGAAACTCCGGCCGACAGTGACGAATGACCGGTCAGCACCCATCAT TTGATGAAAAGCCGGCCGTGGGATCTCCGGCACCTGTTCAGTTCTCACCTGCAAAACGAT AAGTGTATACGTTTGATAAGTGCTGTACTGGTGCAAAGCTTCACCAGAGGGTGCCTGAAC TTCAGTGTACTCCCCTCGAGCAAATCAGCGCATTTTCTAATTGAACATAGTCAGGTTTAC ACATTTTTCTTTCAATCAGCTGGGTTTACGTGTTTTTTTTAATCGGTGATAATGATCAAC TCAACCACTTAAAACATCTTCTTCCCATTCTGCTCAAAAACAGTAAATTTGGTTCCAATC CTTATTGTATCATTTTTTGGTAATTTTTTTCTTTTTTTGGCCACCCCGAGTCACCTGCAG TCCCGGGCCAGGGATCAAATCTGTGTCCCCGTGCTGCAGAGACACCGCTGATCCCGTCGC GCCACAGCAGCAACGCCTATGATTATTTTTTTAAAAGTCAGAATAAGGGATAGTTGATGC TTTCATGACTGGCTTTCTGCCCCGGAAAAGCAAATGAGATCGGTTTTATTTTATCAAGCA TGATGTGCTGACAGAGCATTATGATATTCAAGGAAAATACTATGTAAATTTGCGTCCCGG CATGCAAATCATCTTAAGCAATATAAAGTATGAGAATATTGTATAAAATCTAATGTTTGA AAAACGTTTAAATTTTTGCTTAATCAAATGTAGCCCCACCCAAGCAAGATAGAGAATCCC CCCACTCCCCAGGACTGCTGTAGACACAGCTCTAGAGCACCGAGAATTCACCTTTCTCTC ATCACCGCCATGGTATCACACCACCAATTTCAAAGAGGTCCTGAATTTAGGAGTTGTGCG TTACCAGCCGGAATGAGCAATGAAAACCCACCAGGCTGTGCCACCCTAAGGTCTGTGTAG AAACCCTAGGTGCTCTCACCGAGCTGACTGGGGGCTGCACTTCAGCTGGGACCCGCCACT GTGCACGGGGAAGCTGGGTTTTGGGAGGGAATCAGAGCCCTGGGATCAGGGGGCGTCTCT GGCTGCAGGGACGAGACCCAGTTTGGAGGCTGGAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 204-438, gnl|bosTau2|chr24 (42083656-42083421) | |
| 204-438, gnl|Hg17|chr7 (97581865-97581631) | |
| 204-438, gnl|Mm7|chr5 (143306769-143306551) | |
| 283-427, gnl|bosTau2|chr19 (44829307-44829451) | |
| 283-427, gnl|canFam2|chr9 (3921826-3921600) | |
| 283-427, gnl|danRer3|chrUn (117886017-117885795) | |
| 283-427, gnl|echTel1|scaffold_158797 (273-57) | |
| 283-427, gnl|fr1|chrUn (170092243-170092476) | |
| 283-427, gnl|galGal2|chr3_random (241312-241083) | |
| 283-427, gnl|hg17|chr17 (76692901-76693126) | |
| 283-427, gnl|Hg17|chr17 (76692976-76693122) | |
| 283-427, gnl|loxAfr1|scaffold_35301 (654-887) | |
| 283-427, gnl|mm7|chr11 (120106526-120106755) | |
| 283-427, gnl|Mm7|chr11 (120106601-120106740) | |
| 283-427, gnl|monDom2|scaffold_18 (12831703-12831928) | |
| 283-427, gnl|oryCun1|scaffold_150070 (327-555) | |
| 283-427, gnl|panTro1|chr19 (80409109-80409334) | |
| 283-427, gnl|rheMac2|chr16 (76552964-76553189) | |
| 283-427, gnl|rn3|chr10 (109424376-109424605) | |
| 283-427, gnl|tetNig1|chr3 (10532920-10532682) | |
| 283-427, gnl|xenTro1|scaffold_413 (202223-201999) | |
| 491-678, gnl|bosTau2|chr24 (42081291-42081105) | |
| 491-678, gnl|canFam2|chr6 (14050856-14050643) | |
| 491-678, gnl|dasNov1|scaffold_214734 (3737-3524) | |
| 491-678, gnl|echTel1|scaffold_220134 (547-334) | |
| 491-678, gnl|galGal2|chr14 (3354441-3354626) | |
| 491-678, gnl|hg17|chr7 (97578146-97578359) | |
| 491-678, gnl|Hg17|chr7 (97578341-97578155) | |
| 491-678, gnl|loxAfr1|scaffold_14231 (19599-19387) | |
| 491-678, gnl|mm7|chr5 (143303797-143304014) | |
| 491-678, gnl|Mm7|chr5 (143303996-143303798) | |
| 491-678, gnl|monDom2|scaffold_19 (44450464-44450674) | |
| 491-678, gnl|rheMac2|chr3 (45484105-45484318) | |
| 491-678, gnl|rn3|chr12 (10689025-10688808) | |
| 709-966, gnl|bosTau2|chr24 (42072681-42072424) | |
| 709-966, gnl|Hg17|chr7 (97567562-97567310) | |
| 709-966, gnl|Mm7|chr5 (143294064-143293812) | |
| 1228-1675, gnl|bosTau2|chr24 (42072307-42071883) | |
| 1228-1675, gnl|Hg17|chr7 (97567179-97566762) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-438, gnl|bosTau2|chr24 (42083656-42083421) | |
| 204-438, gnl|Hg17|chr7 (97581865-97581631) | |
| 204-438, gnl|Mm7|chr5 (143306769-143306551) | |
| 283-427, gnl|bosTau2|chr19 (44829307-44829451) | |
| 283-427, gnl|canFam2|chr9 (3921826-3921600) | |
| 283-427, gnl|danRer3|chrUn (117886017-117885795) | |
| 283-427, gnl|echTel1|scaffold_158797 (273-57) | |
| 283-427, gnl|fr1|chrUn (170092243-170092476) | |
| 283-427, gnl|galGal2|chr3_random (241312-241083) | |
| 283-427, gnl|hg17|chr17 (76692901-76693126) | |
| 283-427, gnl|Hg17|chr17 (76692976-76693122) | |
| 283-427, gnl|loxAfr1|scaffold_35301 (654-887) | |
| 283-427, gnl|mm7|chr11 (120106526-120106755) | |
| 283-427, gnl|Mm7|chr11 (120106601-120106740) | |
| 283-427, gnl|monDom2|scaffold_18 (12831703-12831928) | |
| 283-427, gnl|oryCun1|scaffold_150070 (327-555) | |
| 283-427, gnl|panTro1|chr19 (80409109-80409334) | |
| 283-427, gnl|rheMac2|chr16 (76552964-76553189) | |
| 283-427, gnl|rn3|chr10 (109424376-109424605) | |
| 283-427, gnl|tetNig1|chr3 (10532920-10532682) | |
| 283-427, gnl|xenTro1|scaffold_413 (202223-201999) | |
| 491-678, gnl|bosTau2|chr24 (42081291-42081105) | |
| 491-678, gnl|canFam2|chr6 (14050856-14050643) | |
| 491-678, gnl|dasNov1|scaffold_214734 (3737-3524) | |
| 491-678, gnl|echTel1|scaffold_220134 (547-334) | |
| 491-678, gnl|galGal2|chr14 (3354441-3354626) | |
| 491-678, gnl|hg17|chr7 (97578146-97578359) | |
| 491-678, gnl|Hg17|chr7 (97578341-97578155) | |
| 491-678, gnl|loxAfr1|scaffold_14231 (19599-19387) | |
| 491-678, gnl|mm7|chr5 (143303797-143304014) | |
| 491-678, gnl|Mm7|chr5 (143303996-143303798) | |
| 491-678, gnl|monDom2|scaffold_19 (44450464-44450674) | |
| 491-678, gnl|rheMac2|chr3 (45484105-45484318) | |
| 491-678, gnl|rn3|chr12 (10689025-10688808) | |
| 709-966, gnl|bosTau2|chr24 (42072681-42072424) | |
| 709-966, gnl|Hg17|chr7 (97567562-97567310) | |
| 709-966, gnl|Mm7|chr5 (143294064-143293812) | |
| 1228-1675, gnl|bosTau2|chr24 (42072307-42071883) | |
| 1228-1675, gnl|Hg17|chr7 (97567179-97566762) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| rec (0.519211) | |
| cst (0.420109) | |
| cje (0.330469) | |
| aor (0.195274) | |
| col (0.195008) | |
| sin (0.174948) | |
| cut (0.169924) | |
| cag (0.151194) | |
| pla (0.133672) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.519211) | |
| cst (0.420109) | |
| cje (0.330469) | |
| aor (0.195274) | |
| col (0.195008) | |
| sin (0.174948) | |
| cut (0.169924) | |
| cag (0.151194) | |
| pla (0.133672) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |