Non-Coding RNA Search

Ss1.1-Pig4-TMW8016L21.5

Sequence:


               
               CTCCAGCTTTTATTTCCAGCAGCAGCAAGTAGTAATAAACATGAAATCTGACTGGTTAGC
AGCTTTGTAAGAAAAGAATGCATTCAATTGTAAAGCTTCTTCTGAATCATTTAATCCAGT
TGCACTGAATATTCAACAAATAGTAACACTTAACACCTTTTATATACTGTTTTTGTACAG
TGTTGAATTGAATTCCAGGTTAAGGTACTCAGAGCTTTTATCCTACAAGCATTGCCATTC
TCCAAGTCTAGGTAGTAGGGCAACAAGATTGAAAAGTATCTAATGCCACTCAGGGTTTTA
ACCTGAATTGCTGGACAACAGCACCAATATTCACAAAACCAAAATATACAGTAGGAAGAG
ACCAGGTTTTAGAAAGGCAGGTAGTGAGAGTTGTGGTAGTAGTGAAATGATGGCATTGTT
CAACTTGAAGTTTGATTTGAACTGTGGTGTATCTAGATAAAGCTTAGCCACTGGAAATAA
GCACCAAGAGTTGAGCATAGTGACCTAGCTCTGAACTGACAATGTTTAGGTAATTGTGGA
AGGTACAGAATGAAATGTGGTTGCCCAGGGAGTGTGTGCATATGTAAGAAAAGCTGATAA
TAGAATCATAGGCAACACCAACACCAGTGAGGAAGAAGTGTGAATGCCAATTGAAAACTG
AAATGAATCATTCCAAGGCAGGGGAATTAGGAGAGACTGGGTTAAGAAGCCAAAGGTGTT
AAGGACCCAGAAGTAAAGGAAGGACTGAATAGTGCCCATAGGCATTGATAATCAAGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGCTTTTATTTCCAGCAGCAGCAAGTAGTAATAAACATGAAATCTGACTGGTTAGC
AGCTTTGTAAGAAAAGAATGCATTCAATTGTAAAGCTTCTTCTGAATCATTTAATCCAGT
TGCACTGAATATTCAACAAATAGTAACACTTAACACCTTTTATATACTGTTTTTGTACAG
TGTTGAATTGAATTCCAGGTTAAGGTACTCAGAGCTTTTATCCTACAAGCATTGCCATTC
TCCAAGTCTAGGTAGTAGGGCAACAAGATTGAAAAGTATCTAATGCCACTCAGGGTTTTA
ACCTGAATTGCTGGACAACAGCACCAATATTCACAAAACCAAAATATACAGTAGGAAGAG
ACCAGGTTTTAGAAAGGCAGGTAGTGAGAGTTGTGGTAGTAGTGAAATGATGGCATTGTT
CAACTTGAAGTTTGATTTGAACTGTGGTGTATCTAGATAAAGCTTAGCCACTGGAAATAA
GCACCAAGAGTTGAGCATAGTGACCTAGCTCTGAACTGACAATGTTTAGGTAATTGTGGA
AGGTACAGAATGAAATGTGGTTGCCCAGGGAGTGTGTGCATATGTAAGAAAAGCTGATAA
TAGAATCATAGGCAACACCAACACCAGTGAGGAAGAAGTGTGAATGCCAATTGAAAACTG
AAATGAATCATTCCAAGGCAGGGGAATTAGGAGAGACTGGGTTAAGAAGCCAAAGGTGTT
AAGGACCCAGAAGTAAAGGAAGGACTGAATAGTGCCCATAGGCATTGATAATCAAGAGGG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-258, gnl|bosTau2|chr3 (63026388-63026120)
               

               
               1-258, gnl|canFam2|chr15 (11959136-11958703)
               

               
               1-258, gnl|dasNov1|scaffold_7249 (81092-80711)
               

               
               1-258, gnl|hg17|chr1 (52594609-52594999)
               

               
               1-258, gnl|Hg17|chr1 (52594822-52595095)
               

               
               1-258, gnl|loxAfr1|scaffold_2538 (72445-72062)
               

               
               1-258, gnl|mm7|chr4 (107941394-107941028)
               

               
               1-258, gnl|oryCun1|scaffold_102800 (1099-1457)
               

               
               1-258, gnl|panTro1|chr1 (50819434-50819827)
               

               
               1-258, gnl|rheMac2|chr1 (55251766-55252151)
               

               
               1-258, gnl|rn3|chr5 (129871575-129871207)
               


               
               271-778, gnl|bosTau2|chr3 (63026083-63025590)
               

               
               271-778, gnl|Hg17|chr1 (52595133-52595633)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-258, gnl|bosTau2|chr3 (63026388-63026120)
               

               
               1-258, gnl|canFam2|chr15 (11959136-11958703)
               

               
               1-258, gnl|dasNov1|scaffold_7249 (81092-80711)
               

               
               1-258, gnl|hg17|chr1 (52594609-52594999)
               

               
               1-258, gnl|Hg17|chr1 (52594822-52595095)
               

               
               1-258, gnl|loxAfr1|scaffold_2538 (72445-72062)
               

               
               1-258, gnl|mm7|chr4 (107941394-107941028)
               

               
               1-258, gnl|oryCun1|scaffold_102800 (1099-1457)
               

               
               1-258, gnl|panTro1|chr1 (50819434-50819827)
               

               
               1-258, gnl|rheMac2|chr1 (55251766-55252151)
               

               
               1-258, gnl|rn3|chr5 (129871575-129871207)
               


               
               271-778, gnl|bosTau2|chr3 (63026083-63025590)
               

               
               271-778, gnl|Hg17|chr1 (52595133-52595633)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               thg (0.126791)
               

               
               eep (0.122564)

	1-258, gnl\|bosTau2\|chr3 (63026388-63026120)
	1-258, gnl\|canFam2\|chr15 (11959136-11958703)
	1-258, gnl\|dasNov1\|scaffold_7249 (81092-80711)
	1-258, gnl\|hg17\|chr1 (52594609-52594999)
	1-258, gnl\|Hg17\|chr1 (52594822-52595095)
	1-258, gnl\|loxAfr1\|scaffold_2538 (72445-72062)
	1-258, gnl\|mm7\|chr4 (107941394-107941028)
	1-258, gnl\|oryCun1\|scaffold_102800 (1099-1457)
	1-258, gnl\|panTro1\|chr1 (50819434-50819827)
	1-258, gnl\|rheMac2\|chr1 (55251766-55252151)
	1-258, gnl\|rn3\|chr5 (129871575-129871207)

	271-778, gnl\|bosTau2\|chr3 (63026083-63025590)
	271-778, gnl\|Hg17\|chr1 (52595133-52595633)