Non-Coding RNA Search

Ss1.1-Pig4-TMW8016M06.5

Sequence:


               
               TTTTTGGAAAAAAATTATATTTGTAGCAAAAAAAAAAAAAGAGAGAGAGAGACAGCAATA
AATTGAATCAGTGCCATGCTCTTGAAATGATGAACTAAGTCTTAGAAGTTGATAATATAT
TTTTTAAAAATTCCAACTCCAGTTTTTGTTTAGGTGATTGTCTTAGTCCTCAAATTGTTA
GTGGGCACAGTCTGTAAACAGAAAACAGGGCCTGCGGAAAAACCTGAGGGCACTCTGTAA
TCTCCATCTCAGAATCTCAATTTGATAGAAACTTTAATTCTAGTGCAGTTTCAGAATCAT
TGCCAGAGAGATTCAGGTTCTAGTAACAAGTGTAATTCTGCTTCTACTGAAAACGGTAAA
GGTACTGAAGTGTGACACTGATCAGAAGCGATGTGTATCAGAAATGATGTAATTCTATTT
TCCCTCCAAACATTTCCTTACATCCTCTTCTACTTGGTGTTTCTCTATCACTCTCAACAT
TATTTGTTGATTATTATCTTCCTGCTCTTTTTATTAAAATCTGGGCAATCTAGAAATGAA
AGCAAATTCCTATTTGCAATGTTCACTTTGTAAAAAATGGGTGGTGCTACAAAAATGCTT
AACTTTTTAATATCCTTTTTTTCTACAAAGTCTGTTTATATGTAAGGATAAATTCTATTT
TAAAGGTTACCGTGTATTTTTTCTAGATGTGAACTATTTATAATTGCTTTTGTACAGGAG
CTTGTAAACTAGGCATAACAGATTTTTTAGGATCTATATGGTTACTTTAGTATACACTTG
TTTCTTTAAAGAGTATCAGATGATCAGTGTTATTTGGTTAATTTGTGCAATTTGTCATAT
TTGAACTTTGTTGTCAAATGAAAATTAATGTGTCAATGTCTTTCAGACTTTTTAAGATTC
TTTTGTTTTATTTCAGAATAAAAGTCATATCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGGAAAAAAATTATATTTGTAGCAAAAAAAAAAAAAGAGAGAGAGAGACAGCAATA
AATTGAATCAGTGCCATGCTCTTGAAATGATGAACTAAGTCTTAGAAGTTGATAATATAT
TTTTTAAAAATTCCAACTCCAGTTTTTGTTTAGGTGATTGTCTTAGTCCTCAAATTGTTA
GTGGGCACAGTCTGTAAACAGAAAACAGGGCCTGCGGAAAAACCTGAGGGCACTCTGTAA
TCTCCATCTCAGAATCTCAATTTGATAGAAACTTTAATTCTAGTGCAGTTTCAGAATCAT
TGCCAGAGAGATTCAGGTTCTAGTAACAAGTGTAATTCTGCTTCTACTGAAAACGGTAAA
GGTACTGAAGTGTGACACTGATCAGAAGCGATGTGTATCAGAAATGATGTAATTCTATTT
TCCCTCCAAACATTTCCTTACATCCTCTTCTACTTGGTGTTTCTCTATCACTCTCAACAT
TATTTGTTGATTATTATCTTCCTGCTCTTTTTATTAAAATCTGGGCAATCTAGAAATGAA
AGCAAATTCCTATTTGCAATGTTCACTTTGTAAAAAATGGGTGGTGCTACAAAAATGCTT
AACTTTTTAATATCCTTTTTTTCTACAAAGTCTGTTTATATGTAAGGATAAATTCTATTT
TAAAGGTTACCGTGTATTTTTTCTAGATGTGAACTATTTATAATTGCTTTTGTACAGGAG
CTTGTAAACTAGGCATAACAGATTTTTTAGGATCTATATGGTTACTTTAGTATACACTTG
TTTCTTTAAAGAGTATCAGATGATCAGTGTTATTTGGTTAATTTGTGCAATTTGTCATAT
TTGAACTTTGTTGTCAAATGAAAATTAATGTGTCAATGTCTTTCAGACTTTTTAAGATTC
TTTTGTTTTATTTCAGAATAAAAGTCATATCACATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-934, gnl|bosTau2|chr2 (41204501-41203592)
               

               
               1-934, gnl|Hg17|chr2 (133264045-133263110)
               

               
               1-934, gnl|Mm7|chr1 (125792999-125792117)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-934, gnl|bosTau2|chr2 (41204501-41203592)
               

               
               1-934, gnl|Hg17|chr2 (133264045-133263110)
               

               
               1-934, gnl|Mm7|chr1 (125792999-125792117)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               liv (0.438853)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	1-934, gnl\|bosTau2\|chr2 (41204501-41203592)
	1-934, gnl\|Hg17\|chr2 (133264045-133263110)
	1-934, gnl\|Mm7\|chr1 (125792999-125792117)