Ss1.1-Pig4-TMW8016M12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCTTATGAGCCCTTTCTGAACGCCCTCGTGTCCGCAGAGAGGAGAGGCCCGGAGGCCA GCGCGGGAGCGCCGTGGCTCTTCTACTTTGTCTTAACTGTCGGTGAAAATTATCTGGGGA CCCTCTCTGAGGACGGACTGCTGGTGTATTTGAGAGTCCTCCAGGCCTTCCTTGCCCAGT TACCCGTCTCAGCTGCTGGTACAAGCTGTCAGGACTCAGCCAGTGACTCTGAAGACGAGA GTGAAGAGACAGACAAACAGCCGAGCACGCCGGAGGGCGGCCGACTCTCCGTCCCGTACA TCACCGAGGAGTGCCTGAAAAAGCTGGATACCAAGCAGCAGACCAACACCCTGCTCAACC TGGTCTGGAGGGATTCGGCCAGCGAGGAGGCCTTCACGCTGATGGCGGCCGTCTGCCACA CGCTGATGGTGCAGCACCGGGTCATGGTGCCCAAAGCCAGGCTGCTCTACAGTTTAGCCT TCAATGCCAGGTTTCTGAGGCATCTTTGGTTTCTCATATCTTCTATGACAACACGGATGA TCACAGGGTCTGTGGTGCCATTGCTTCAGGTGATGTCCAGGGGCTCTCCCATGTCTTTCG AAGATTCCAGCCGAATCATCCCCCTCTTCTACCTCTTTAGCTCCTTGTTCAGCCACTCCC TCATCTCCATACACGATAACGAATTCTTCGGTGATCCCATAGAAGTTGCCGGTCAGAGAC CGTCATCAATGATGCCCTTTACTTTGGAGGAGCTGGTGATGCTTTCTCGGTGCCTCCGAG ACGCCTGCTTAGGGATCATCAAGTTGGCTTATCCGGAAACAAAACCGGAAGTTCGGGAAG AGTACGTCACAGCCTTTCAGAGCGTTGGAGTTACGACGAATTCTGAAATGCAGCAGTGTA TACAGATGGAACAGAAACGATGGATTCAGTTGTTTAAGGTTATCACCAACCTGGTGAAAA TGCTGAAGTCCAGAGACACAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCTTATGAGCCCTTTCTGAACGCCCTCGTGTCCGCAGAGAGGAGAGGCCCGGAGGCCA GCGCGGGAGCGCCGTGGCTCTTCTACTTTGTCTTAACTGTCGGTGAAAATTATCTGGGGA CCCTCTCTGAGGACGGACTGCTGGTGTATTTGAGAGTCCTCCAGGCCTTCCTTGCCCAGT TACCCGTCTCAGCTGCTGGTACAAGCTGTCAGGACTCAGCCAGTGACTCTGAAGACGAGA GTGAAGAGACAGACAAACAGCCGAGCACGCCGGAGGGCGGCCGACTCTCCGTCCCGTACA TCACCGAGGAGTGCCTGAAAAAGCTGGATACCAAGCAGCAGACCAACACCCTGCTCAACC TGGTCTGGAGGGATTCGGCCAGCGAGGAGGCCTTCACGCTGATGGCGGCCGTCTGCCACA CGCTGATGGTGCAGCACCGGGTCATGGTGCCCAAAGCCAGGCTGCTCTACAGTTTAGCCT TCAATGCCAGGTTTCTGAGGCATCTTTGGTTTCTCATATCTTCTATGACAACACGGATGA TCACAGGGTCTGTGGTGCCATTGCTTCAGGTGATGTCCAGGGGCTCTCCCATGTCTTTCG AAGATTCCAGCCGAATCATCCCCCTCTTCTACCTCTTTAGCTCCTTGTTCAGCCACTCCC TCATCTCCATACACGATAACGAATTCTTCGGTGATCCCATAGAAGTTGCCGGTCAGAGAC CGTCATCAATGATGCCCTTTACTTTGGAGGAGCTGGTGATGCTTTCTCGGTGCCTCCGAG ACGCCTGCTTAGGGATCATCAAGTTGGCTTATCCGGAAACAAAACCGGAAGTTCGGGAAG AGTACGTCACAGCCTTTCAGAGCGTTGGAGTTACGACGAATTCTGAAATGCAGCAGTGTA TACAGATGGAACAGAAACGATGGATTCAGTTGTTTAAGGTTATCACCAACCTGGTGAAAA TGCTGAAGTCCAGAGACACAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr4 (69122956-69122814) | |
| 1-143, gnl|Hg17|chr7 (156474382-156474526) | |
| 1-143, gnl|Mm7|chr5 (28634147-28634290) | |
| 272-462, gnl|bosTau2|chr4 (69118823-69118633) | |
| 272-462, gnl|canFam2|chr16 (22588390-22588610) | |
| 272-462, gnl|danRer3|chr7 (32509719-32509930) | |
| 272-462, gnl|dasNov1|scaffold_35202 (1379-1159) | |
| 272-462, gnl|echTel1|scaffold_290619 (26692-26912) | |
| 272-462, gnl|fr1|chrUn (172317316-172317530) | |
| 272-462, gnl|galGal2|chr2 (8036782-8037002) | |
| 272-462, gnl|hg17|chr7 (156478980-156479200) | |
| 272-462, gnl|Hg17|chr7 (156479003-156479193) | |
| 272-462, gnl|loxAfr1|scaffold_32586 (32178-32399) | |
| 272-462, gnl|mm7|chr5 (28639795-28640014) | |
| 272-462, gnl|Mm7|chr5 (28639817-28640007) | |
| 272-462, gnl|monDom2|scaffold_7 (19311439-19311654) | |
| 272-462, gnl|panTro1|chr6 (159299550-159299770) | |
| 272-462, gnl|rheMac2|chr3 (194298792-194299012) | |
| 272-462, gnl|rn3|chr4 (962680-962460) | |
| 272-462, gnl|tetNig1|chr6 (4120538-4120748) | |
| 272-462, gnl|xenTro1|scaffold_376 (173177-173418) | |
| 704-943, gnl|bosTau2|chr4 (69105895-69105656) | |
| 704-943, gnl|canFam2|chr16 (22602974-22603329) | |
| 704-943, gnl|danRer3|chr7 (32527448-32527770) | |
| 704-943, gnl|dasNov1|scaffold_41806 (7550-7204) | |
| 704-943, gnl|echTel1|scaffold_297453 (1451-1794) | |
| 704-943, gnl|fr1|chrUn (172320329-172320693) | |
| 704-943, gnl|galGal2|chr2 (8045525-8045901) | |
| 704-943, gnl|hg17|chr7 (156499764-156500113) | |
| 704-943, gnl|Hg17|chr7 (156499871-156500110) | |
| 704-943, gnl|loxAfr1|scaffold_21048 (31222-30874) | |
| 704-943, gnl|mm7|chr5 (28652335-28652716) | |
| 704-943, gnl|Mm7|chr5 (28652464-28652705) | |
| 704-943, gnl|monDom2|scaffold_7 (19345382-19345727) | |
| 704-943, gnl|oryCun1|scaffold_193173 (46745-46396) | |
| 704-943, gnl|panTro1|chr6 (159320778-159321128) | |
| 704-943, gnl|rheMac2|chr3 (194319267-194319616) | |
| 704-943, gnl|rn3|chr4 (946740-946354) | |
| 704-943, gnl|tetNig1|chr6 (4123582-4123921) | |
| 704-943, gnl|xenTro1|scaffold_376 (197547-197912) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr4 (69122956-69122814) | |
| 1-143, gnl|Hg17|chr7 (156474382-156474526) | |
| 1-143, gnl|Mm7|chr5 (28634147-28634290) | |
| 272-462, gnl|bosTau2|chr4 (69118823-69118633) | |
| 272-462, gnl|canFam2|chr16 (22588390-22588610) | |
| 272-462, gnl|danRer3|chr7 (32509719-32509930) | |
| 272-462, gnl|dasNov1|scaffold_35202 (1379-1159) | |
| 272-462, gnl|echTel1|scaffold_290619 (26692-26912) | |
| 272-462, gnl|fr1|chrUn (172317316-172317530) | |
| 272-462, gnl|galGal2|chr2 (8036782-8037002) | |
| 272-462, gnl|hg17|chr7 (156478980-156479200) | |
| 272-462, gnl|Hg17|chr7 (156479003-156479193) | |
| 272-462, gnl|loxAfr1|scaffold_32586 (32178-32399) | |
| 272-462, gnl|mm7|chr5 (28639795-28640014) | |
| 272-462, gnl|Mm7|chr5 (28639817-28640007) | |
| 272-462, gnl|monDom2|scaffold_7 (19311439-19311654) | |
| 272-462, gnl|panTro1|chr6 (159299550-159299770) | |
| 272-462, gnl|rheMac2|chr3 (194298792-194299012) | |
| 272-462, gnl|rn3|chr4 (962680-962460) | |
| 272-462, gnl|tetNig1|chr6 (4120538-4120748) | |
| 272-462, gnl|xenTro1|scaffold_376 (173177-173418) | |
| 704-943, gnl|bosTau2|chr4 (69105895-69105656) | |
| 704-943, gnl|canFam2|chr16 (22602974-22603329) | |
| 704-943, gnl|danRer3|chr7 (32527448-32527770) | |
| 704-943, gnl|dasNov1|scaffold_41806 (7550-7204) | |
| 704-943, gnl|echTel1|scaffold_297453 (1451-1794) | |
| 704-943, gnl|fr1|chrUn (172320329-172320693) | |
| 704-943, gnl|galGal2|chr2 (8045525-8045901) | |
| 704-943, gnl|hg17|chr7 (156499764-156500113) | |
| 704-943, gnl|Hg17|chr7 (156499871-156500110) | |
| 704-943, gnl|loxAfr1|scaffold_21048 (31222-30874) | |
| 704-943, gnl|mm7|chr5 (28652335-28652716) | |
| 704-943, gnl|Mm7|chr5 (28652464-28652705) | |
| 704-943, gnl|monDom2|scaffold_7 (19345382-19345727) | |
| 704-943, gnl|oryCun1|scaffold_193173 (46745-46396) | |
| 704-943, gnl|panTro1|chr6 (159320778-159321128) | |
| 704-943, gnl|rheMac2|chr3 (194319267-194319616) | |
| 704-943, gnl|rn3|chr4 (946740-946354) | |
| 704-943, gnl|tetNig1|chr6 (4123582-4123921) | |
| 704-943, gnl|xenTro1|scaffold_376 (197547-197912) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |